INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LC616072 | Stx2a-converting phage Stx2_PV03-14 | 65397 | 49.485 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.120 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_33;cro orf_34;antirepressor orf_47;antirepressor orf_60;antirepressor orf_63 |
| LC616073 | Stx2a-converting phage Stx2_08E027 | 65397 | 49.485 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.120 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_33;cro orf_34;antirepressor orf_47;antirepressor orf_60;antirepressor orf_63 |
| LC616074 | Stx2a-converting phage Stx2_10902 | 65394 | 49.485 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.110 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_33;cro orf_34;antirepressor orf_47;antirepressor orf_60;antirepressor orf_63 |
| LC616075 | Stx2a-converting phage Stx2_06E050 | 65392 | 49.485 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.110 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_33;cro orf_34;antirepressor orf_47;antirepressor orf_60;antirepressor orf_63 |
| LC616076 | Stx2a-converting phage Stx2_2935 | 65398 | 49.486 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.120 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_33;cro orf_34;antirepressor orf_47;antirepressor orf_60;antirepressor orf_63 |
| LC616077 | Stx2a-converting phage Stx2_13518 | 65392 | 49.483 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.110 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_33;cro orf_34;antirepressor orf_47;antirepressor orf_60;antirepressor orf_63 |
| LC616078 | Stx2a-converting phage Stx2_10E082 | 65396 | 49.485 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 99.110 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_33;cro orf_34;antirepressor orf_47;antirepressor orf_60;antirepressor orf_63 |
| LC616079 | Stx2a-converting phage Stx2_KH16-043 | 45156 | 52.491 | Unspecified | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.150 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_2 |
| LC620505 | Escherichia phage NiC89 | 166727 | 35.417 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escrehichea coli | High-quality | High-quality | 99.160 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus nbeco | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LC623721 | Enterococcus phage vB_EfaS-SRH2 | 38749 | 34.778 | Enterococcus | Group I | Efquatrovirus | Efquatrovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Entrococcus faecalis | High-quality | High-quality | 95.150 | AAI-based (high-confidence) | Efquatrovirus | Efquatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |