INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LC473039 | Escherichia phage L27 | 86019 | 38.936 | Escherichia | Group I | Felixounavirus | Felixounavirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.720 | AAI-based (high-confidence) | Felixounavirus | Felixounavirus L27 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LC483177 | Klebsiella phage 05F01 | 147331 | 35.546 | Klebsiella | Group I | Stephanstirmvirinae | Unclassified | Stephanstirmvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella quasipneumoniae strain S05 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| LC487410 | Vibrio phage KIT04 | 114933 | 40.243 | Vibrio | Group I | Ermolyevavirinae | Unclassified | Ermolyevavirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio parahaemolyticus ATCC 17802 | High-quality | High-quality | 98.950 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| LC487996 | Stx2-converting phage Stx2a 981509 | 25488 | 46.379 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain 981509 | Low-quality | Genome-fragment | 39.770 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;antirepressor orf_5;antirepressor orf_6;antirepressor orf_7;cro orf_24;cro orf_25;antirepressor orf_34 |
| LC487997 | Stx2-converting phage Stx2a F578 | 24274 | 47.001 | Unspecified | Group I | Sepvirinae | Unclassified | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 strain F578 | Low-quality | Genome-fragment | 38.320 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_24;cro orf_25;antirepressor orf_39 |
| LC492751 | Staphylococcus phage KSAP7 | 137950 | 29.874 | Staphylococcus | Group I | Silviavirus | Silviavirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Silviavirus | Silviavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_184 |
| LC492752 | Staphylococcus phage KSAP11 | 138307 | 29.878 | Staphylococcus | Group I | Silviavirus | Silviavirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Silviavirus | Silviavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_185 |
| LC494302 | Escherichia phage SP27 | 347152 | 34.170 | Escherichia | Group I | Asteriusvirus | Asteriusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 92.120 | AAI-based (high-confidence) | Asteriusvirus | Asteriusvirus PBECO4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LC507823 | Salmonella phage vB_StyS-sam | 43221 | 49.765 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus vsam | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| LC513943 | Enterococcus phage vB_EfaS-DELF1 | 40248 | 34.931 | Enterococcus | Group I | Delfunavirus | Delfunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 95.790 | AAI-based (high-confidence) | Delfunavirus | Delfunavirus delf1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |