INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KY787212	Salmonella phage BSP22A	110741	40.079	Salmonella	Group I	Epseptimavirus	Epseptimavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serovar typhimurium LT2C	High-quality	High-quality	97.890	AAI-based (high-confidence)	Epseptimavirus	Epseptimavirus S116	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KY787213	Salmonella phage BSP101	157665	44.452	Salmonella	Group I	Kuttervirus	Kuttervirus	Cvivirinae	Ackermannviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica serovar typhimurium LT2C	High-quality	High-quality	99.750	AAI-based (high-confidence)	Kuttervirus	Kuttervirus BSP101	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY794641	Staphylococcus phage vB_Sau_CG	142934	30.512	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus ATCC 25923	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kayvirus	Kayvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY794642	Staphylococcus phage vB_Sau_Clo6	143734	30.863	Staphylococcus	Group I	Twortvirinae	Unclassified	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus ATCC 25923	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kayvirus	Kayvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY794643	Staphylococcus phage vB_Sau_S24	139997	30.863	Staphylococcus	Group I	Twortvirinae	Unclassified	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus ATCC 25923	High-quality	High-quality	98.900	AAI-based (high-confidence)	Kayvirus	Kayvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY798120	Pseudomonas phage WRT	40214	57.420	Pseudomonas	Group I	Ghunavirus	Ghunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas fluorescens group	Complete	High-quality	100.000	DTR (high-confidence)	Ghunavirus	Ghunavirus WRT	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY798121	Pseudomonas phage KNP	40491	57.294	Pseudomonas	Group I	Ghunavirus	Ghunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas fluorescens group	Complete	High-quality	100.000	DTR (high-confidence)	Ghunavirus	Ghunavirus KNP	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY798216	Mycobacterium phage Journey13	48502	62.670	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	92.430	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_30;immunity orf_62
KY817360	Rhodococcus phage Toil	17253	54.472	Rhodococcus	Group I	Epsilontectivirus	Epsilontectivirus	Unclassified	Tectiviridae	Kalamavirales	Tectiliviricetes	Preplasmiviricota	Bamfordvirae	Varidnaviria	Rhodococcus opacus PD631	High-quality	High-quality	100.000	AAI-based (high-confidence)	Epsilontectivirus	Epsilontectivirus toil	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY821088	Bacillus phage Harambe	21684	35.293	Bacillus	Group I	Harambevirus	Harambevirus	Unclassified	Salasmaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus thuringiensis subsp. kurstaki ATCC 33679	High-quality	High-quality	100.000	AAI-based (high-confidence)	Harambevirus	Harambevirus harambe	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic