INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KY705281 | Streptococcus phage P7955 | 36931 | 38.935 | Streptococcus | Group I | Brussowvirus | Brussowvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus ST47795 | High-quality | High-quality | 96.280 | AAI-based (high-confidence) | Brussowvirus | Brussowvirus P7955 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_28;antirepressor orf_30;cro orf_31 |
| KY705282 | Streptococcus phage P8921 | 34516 | 39.002 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus ST64892 | High-quality | High-quality | 93.040 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY705283 | Streptococcus phage P8922 | 34509 | 38.819 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus ST64892 | High-quality | High-quality | 93.050 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus P7154 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY705284 | Streptococcus phage P9851 | 35835 | 39.074 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus ST64985 | High-quality | High-quality | 96.850 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus P9851 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_26;cro orf_27 |
| KY705285 | Streptococcus phage P9852 | 34638 | 40.040 | Streptococcus | Group I | Brussowvirus | Brussowvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus ST64985 | High-quality | High-quality | 91.170 | AAI-based (high-confidence) | Brussowvirus | Brussowvirus bv2972 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_27 |
| KY705286 | Streptococcus phage P9853 | 34469 | 39.726 | Streptococcus | Group I | Brussowvirus | Brussowvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus ST64985 | High-quality | High-quality | 90.100 | AAI-based (high-confidence) | Brussowvirus | Brussowvirus P9853 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_28 |
| KY705287 | Streptococcus phage P9854 | 36979 | 38.938 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus ST64985 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus P9854 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_27;cro orf_28 |
| KY705288 | Streptococcus phage P9901 | 35211 | 38.866 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus ST62990 | High-quality | High-quality | 95.150 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus P9901 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_24;cro orf_25 |
| KY705289 | Streptococcus phage P9902 | 35535 | 38.866 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus ST62990 | High-quality | High-quality | 96.260 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus P9902 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_26;cro orf_27 |
| KY705290 | Streptococcus phage P9903 | 35256 | 38.725 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus ST62990 | High-quality | High-quality | 95.540 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus P9903 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_27;cro orf_28 |