INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KY658676 | Vibrio phage P2 | 46149 | 43.136 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio anguillarum BA35 | Complete | High-quality | 100.000 | DTR (medium-confidence) | Strymvirus | Strymvirus H2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_28 |
| KY658677 | Vibrio phage P3 | 53242 | 43.013 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio anguillarum BA35 | Complete | High-quality | 100.000 | DTR (high-confidence) | Strymvirus | Strymvirus strym | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_28 |
| KY658678 | Vibrio phage pVa-3 | 54344 | 43.063 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio anguillarum BA35 | Complete | High-quality | 100.000 | DTR (high-confidence) | Strymvirus | Strymvirus strym | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_28 |
| KY658679 | Vibrio phage pVa-4 | 54295 | 43.072 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio anguillarum BA35 | Complete | High-quality | 100.000 | DTR (high-confidence) | Strymvirus | Strymvirus strym | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_28 |
| KY658680 | Vibrio phage pVa-8 | 53227 | 43.020 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio anguillarum BA35 | Complete | High-quality | 100.000 | DTR (high-confidence) | Strymvirus | Strymvirus strym | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_28 |
| KY661963 | Liberibacter phage P-JXGC-3 | 31449 | 39.966 | Liberibacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Candidatus Liberibacter asiaticus str. JXGC | Medium-quality | Genome-fragment | 80.800 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | antirepressor orf_26 |
| KY670595 | Acinetobacter phage WCHABP12 | 45415 | 37.578 | Acinetobacter | Group I | Sichuanvirus | Sichuanvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | Complete | High-quality | 100.000 | DTR (high-confidence) | Sichuanvirus | Sichuanvirus WCHABP12 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KY676783 | Mycobacterium phage Chorkpop | 68506 | 66.447 | Mycobacterium | Group I | Pegunavirus | Pegunavirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis mc2 115 | High-quality | High-quality | 98.600 | AAI-based (high-confidence) | Pegunavirus | Pegunavirus soto | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY676784 | Streptomyces phage ToastyFinz | 39693 | 72.512 | Streptomyces | Group I | Raleighvirus | Raleighvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces viridochromogenes DSM40736 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_27;cro orf_30 |
| KY677846 | Escherichia phage phiLLS | 107263 | 38.989 | Escherichia | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157 EC-48 (63-Fv18-1) | High-quality | High-quality | 94.910 | AAI-based (high-confidence) | Tequintavirus | Tequintavirus LLS | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |