INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KY618819 | Pseudomonas phage PAXYB1 | 43337 | 62.289 | Pseudomonas | Group I | Phikmvvirus | Phikmvvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Phikmvvirus | Phikmvvirus PAXYB1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KY619305 | Escherichia phage vB_EcoS_ESCO41 | 50800 | 46.085 | Escherichia | Group I | Nouzillyvirus | Nouzillyvirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 99.930 | AAI-based (high-confidence) | Nouzillyvirus | Nouzillyvirus ESCO41 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_46 |
| KY620117 | Salmonella phage BSPM4 | 59097 | 56.541 | Salmonella | Group I | Chivirus | Chivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | High-quality | High-quality | 91.500 | AAI-based (high-confidence) | Chivirus | Chivirus BSPM4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_60 |
| KY622015 | Shewanella phage SppYZU01 | 43567 | 55.723 | Shewanella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shewanella baltica | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KY624610 | Corynebacterium phage LGCM-V3 | 36671 | 51.046 | Corynebacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Corynebacterium pseudotuberculosis biovar Equi 33 | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_3;antirepressor orf_16 |
| KY624611 | Corynebacterium phage LGCM-V4 | 36674 | 51.042 | Corynebacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Corynebacterium pseudotuberculosis biovar Equi 34 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_3;antirepressor orf_17 |
| KY624612 | Corynebacterium phage LGCM-V6 | 36671 | 51.049 | Corynebacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Corynebacterium pseudotuberculosis biovar Equi 36 | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_3;antirepressor orf_16 |
| KY624613 | Corynebacterium phage LGCM-V5 | 36671 | 51.049 | Corynebacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Corynebacterium pseudotuberculosis biovar Equi 35 | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_3;antirepressor orf_16 |
| KY624614 | Corynebacterium phage LGCM-V7 | 36671 | 51.049 | Corynebacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Corynebacterium pseudotuberculosis biovar Equi 38 | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_3;antirepressor orf_16 |
| KY624615 | Corynebacterium phage LGCM-V8 | 36671 | 51.049 | Corynebacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Corynebacterium pseudotuberculosis biovar Equi 39 | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_3;antirepressor orf_16 |