Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KY554775Lactococcus phage AM1112616132.546LactococcusGroup I AudreyjarvisvirusAudreyjarvisvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactococcus lactisHigh-qualityHigh-quality99.760AAI-based (high-confidence) AudreyjarvisvirusAudreyjarvisvirus AM1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;integrase orf_155
KY554776Lactococcus phage AM1212584232.556LactococcusGroup I AudreyjarvisvirusAudreyjarvisvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactococcus lactisHigh-qualityHigh-quality99.500AAI-based (high-confidence) AudreyjarvisvirusAudreyjarvisvirus AM1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;integrase orf_155
KY554777Lactococcus phage LW8112817932.570LactococcusGroup I AudreyjarvisvirusAudreyjarvisvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactococcus lactisHigh-qualityHigh-quality100.000AAI-based (high-confidence) AudreyjarvisvirusAudreyjarvisvirus LW81Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_1;integrase orf_154
KY555142Caulobacter phage Ccr1021934866.124CaulobacterGroup I ShapirovirusShapirovirusUnclassifiedJeanschmidtviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Caulobacter crescentus NA1000CompleteHigh-quality100.000DTR (high-confidence) ShapirovirusShapirovirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_10;integrase orf_140;cro orf_221;integrase orf_333
KY555143Caulobacter phage Ccr222029966.129CaulobacterGroup I ShapirovirusShapirovirusUnclassifiedJeanschmidtviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Caulobacter crescentus NA1000CompleteHigh-quality100.000DTR (high-confidence) ShapirovirusShapirovirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_11;integrase orf_139;cro orf_220;integrase orf_333
KY555144Caulobacter phage Ccr521872966.225CaulobacterGroup I ShapirovirusShapirovirusUnclassifiedJeanschmidtviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Caulobacter crescentus NA1000CompleteHigh-quality100.000DTR (high-confidence) ShapirovirusShapirovirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_8;integrase orf_138;integrase orf_188;cro orf_218;integrase orf_326
KY555145Caulobacter phage Ccr2922931966.161CaulobacterGroup I ShapirovirusShapirovirusUnclassifiedJeanschmidtviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Caulobacter crescentus NA1000CompleteHigh-quality100.000DTR (high-confidence) ShapirovirusShapirovirus cbkCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_10;integrase orf_146;cro orf_230;integrase orf_346
KY555146Caulobacter phage Ccr3221579966.160CaulobacterGroup I ShapirovirusShapirovirusUnclassifiedJeanschmidtviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Caulobacter crescentus NA1000CompleteHigh-quality100.000DTR (high-confidence) ShapirovirusShapirovirus cbkCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_8;integrase orf_141;cro orf_214;integrase orf_323
KY555147Caulobacter phage Ccr3421624066.152CaulobacterGroup I ShapirovirusShapirovirusUnclassifiedJeanschmidtviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Caulobacter crescentus NA1000CompleteHigh-quality100.000DTR (high-confidence) ShapirovirusShapirovirus cbkCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_8;integrase orf_145;cro orf_218;integrase orf_327
KY563228Sulfolobus spindle-shaped virus Lassen1627137.078SulfolobusUnclassified AlphafusellovirusAlphafusellovirusUnclassifiedFuselloviridaeUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Sulfolobus sp.High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
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