INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KY549153	Rhodococcus phage AngryOrchard	46597	58.813	Rhodococcus	Group I	Rerduovirus	Rerduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodococcus erythropolis RIA 643	High-quality	High-quality	99.010	AAI-based (high-confidence)	Rerduovirus	Rerduovirus takoda	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_25;immunity orf_51
KY549154	Rhodococcus phage BobbyDazzler	46641	58.809	Rhodococcus	Group I	Rerduovirus	Rerduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodococcus erythropolis RIA 643	High-quality	High-quality	99.110	AAI-based (high-confidence)	Rerduovirus	Rerduovirus RER2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_25;immunity orf_51
KY549155	Mycobacterium phage Tinybot	51402	64.033	Mycobacterium	Group I	Backyardiganvirus	Backyardiganvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Backyardiganvirus	Backyardiganvirus icleared	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;immunity orf_63
KY549443	Enterococcus phage EFP01	155053	37.018	Enterococcus	Group I	Schiekvirus	Schiekvirus	Brockvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecium	High-quality	High-quality	100.000	AAI-based (high-confidence)	Schiekvirus	Schiekvirus EFP01	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY549659	Pectobacterium phage vB_PatP_CB4	76621	48.643	Pectobacterium	Group I	Cbunavirus	Cbunavirus	Waldeevirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pectobacterium atrosepticum DSM 30186	Complete	High-quality	100.000	DTR (high-confidence)	Cbunavirus	Cbunavirus CB4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY554760	Lactococcus phage R3.4	27704	35.381	Lactococcus	Group I	Skunavirus	Skunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis	High-quality	High-quality	91.400	AAI-based (high-confidence)	Skunavirus	Skunavirus R31	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY554761	Lactococcus phage R31	27203	35.378	Lactococcus	Group I	Skunavirus	Skunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis	Medium-quality	Genome-fragment	89.740	AAI-based (high-confidence)	Skunavirus	Skunavirus R31	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KY554762	Lactococcus phage LW31	60551	34.292	Lactococcus	Group I	Teubervirus	Teubervirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Teubervirus	Teubervirus LW31	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_41
KY554763	Lactococcus phage LW32	60161	34.341	Lactococcus	Group I	Teubervirus	Teubervirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis	High-quality	High-quality	99.970	AAI-based (high-confidence)	Teubervirus	Teubervirus LW31	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_42
KY554764	Lactococcus phage LW33	59899	34.376	Lactococcus	Group I	Teubervirus	Teubervirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis	High-quality	High-quality	99.540	AAI-based (high-confidence)	Teubervirus	Teubervirus LW31	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_42