Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KY084243Pectobacterium phage PP743979048.635PectobacteriumGroup I BerlinvirusBerlinvirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pectobacterium wasabiae PB20High-qualityHigh-quality99.570AAI-based (high-confidence) BerlinvirusBerlinvirus PP74Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KY087898Pectobacterium phage PP1015333344.944PectobacteriumGroup I SuwonvirusSuwonvirusCleopatravirinaeChaseviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pectobacterium carotovorum subsp. carotovorum PB29High-qualityHigh-quality100.000AAI-based (high-confidence) SuwonvirusSuwonvirus PP101Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KY087992Mycobacterium phage Mitti5789567.977MycobacteriumGroup I FionnbharthvirusFionnbharthvirusWeiservirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) FionnbharthvirusFionnbharthvirus fionnbharthCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_44;immunity orf_46;cro orf_47
KY087993Mycobacterium phage Hammy6181267.230MycobacteriumGroup I AmginevirusAmginevirusWeiservirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) AmginevirusAmginevirus darthPThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_39;immunity orf_42;cro orf_43
KY092479Streptomyces phage Ididsumtinwong3781772.367StreptomycesGroup I AustintatiousvirusAustintatiousvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptomyces venezuelae ATCC 10712High-qualityHigh-quality100.000AAI-based (high-confidence) AustintatiousvirusAustintatiousvirus ididsumtinwongCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_29;cro orf_32
KY092480Streptomyces phage Picard3952272.605StreptomycesGroup I PicardvirusPicardvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptomyces venezuelae ATCC 10712High-qualityHigh-quality100.000AAI-based (high-confidence) PicardvirusPicardvirus picardCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_29;immunity orf_31;cro orf_32
KY092481Streptomyces phage PapayaSalad3841172.635StreptomycesGroup I AustintatiousvirusAustintatiousvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptomyces venezuelae ATCC 10712High-qualityHigh-quality100.000AAI-based (high-confidence) AustintatiousvirusAustintatiousvirus papayasaladCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_28;cro orf_31;integrase orf_47
KY092482Streptomyces phage Mojorita3849672.537StreptomycesGroup I PicardvirusPicardvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptomyces venezuelae ATCC 10712High-qualityHigh-quality98.700AAI-based (high-confidence) PicardvirusPicardvirus picardCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_29;immunity orf_31;cro orf_32
KY092483Streptomyces phage Bioscum3783072.342StreptomycesGroup I AustintatiousvirusAustintatiousvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptomyces venezuelae ATCC 10712High-qualityHigh-quality100.000AAI-based (high-confidence) AustintatiousvirusAustintatiousvirus ididsumtinwongCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_29;cro orf_32
KY092484Streptomyces phage Raleigh4078571.801StreptomycesGroup I RaleighvirusRaleighvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptomyces griseus ATCC 10137High-qualityHigh-quality100.000AAI-based (high-confidence) RaleighvirusRaleighvirus raleighCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_28;cro orf_31
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