INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KY065486 | Streptococcus phage IPP46 | 40232 | 41.241 | Streptococcus | Group I | Hinxtonvirus | Hinxtonvirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 670 | High-quality | High-quality | 97.160 | AAI-based (high-confidence) | Hinxtonvirus | Hinxtonvirus IPP46 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_4;antirepressor orf_13 |
| KY065487 | Streptococcus phage IPP48 | 37848 | 38.528 | Streptococcus | Group I | Paclarkvirus | Paclarkvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae ST556 | High-quality | High-quality | 97.820 | AAI-based (high-confidence) | Paclarkvirus | Paclarkvirus IPP48 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_4;cro orf_5;antirepressor orf_6 |
| KY065488 | Streptococcus phage IPP50 | 40284 | 39.805 | Streptococcus | Group I | Spinunavirus | Spinunavirus | Ferrettivirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 12F/3 | High-quality | High-quality | 96.130 | AAI-based (high-confidence) | Spinunavirus | Spinunavirus IPP50 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_3;cro orf_9 |
| KY065489 | Streptococcus phage IPP51 | 32793 | 39.039 | Streptococcus | Group I | Adrianbuildvirus | Adrianbuildvirus | Mcshanvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 6A | High-quality | High-quality | 97.300 | AAI-based (high-confidence) | Adrianbuildvirus | Adrianbuildvirus IPP51 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_7;integrase orf_26 |
| KY065490 | Streptococcus phage IPP52 | 36805 | 38.150 | Streptococcus | Group I | Paclarkvirus | Paclarkvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 34/3 | High-quality | High-quality | 95.110 | AAI-based (high-confidence) | Paclarkvirus | Paclarkvirus IPP52 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1 |
| KY065491 | Streptococcus phage IPP53 | 37235 | 38.273 | Streptococcus | Group I | Paclarkvirus | Paclarkvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae GA41538 | High-quality | High-quality | 96.310 | AAI-based (high-confidence) | Paclarkvirus | Paclarkvirus IPP48 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_5;cro orf_6;antirepressor orf_7 |
| KY065492 | Streptococcus phage IPP54 | 38900 | 38.375 | Streptococcus | Group I | Paclarkvirus | Paclarkvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 32F/2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Paclarkvirus | Paclarkvirus IPP54 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_4;cro orf_5;antirepressor orf_6 |
| KY065493 | Streptococcus phage IPP55 | 37847 | 38.706 | Streptococcus | Group I | Paclarkvirus | Paclarkvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 47A/1 | High-quality | High-quality | 97.800 | AAI-based (high-confidence) | Paclarkvirus | Paclarkvirus IPP55 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;antirepressor orf_6 |
| KY065494 | Streptococcus phage IPP57 | 33084 | 40.186 | Streptococcus | Group I | Medawarvirus | Medawarvirus | Mcshanvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae Sp02-1198 | High-quality | High-quality | 95.370 | AAI-based (high-confidence) | Medawarvirus | Medawarvirus IPP57 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_4;antirepressor orf_12;integrase orf_27 |
| KY065495 | Streptococcus phage IPP58 | 32027 | 40.076 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae GA07228 | High-quality | High-quality | 93.080 | AAI-based (high-confidence) | Medawarvirus | Medawarvirus IPP57 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_4;antirepressor orf_12;integrase orf_27 |