INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KX611831 | Mycobacterium phage Pharsalus | 75779 | 63.012 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.510 | AAI-based (high-confidence) | Kostyavirus | Kostyavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_50;immunity orf_53 |
| KX619650 | Mycobacterium phage Jerm | 53163 | 63.347 | Mycobacterium | Group I | Turbidovirus | Turbidovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Turbidovirus | Turbidovirus turbido | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_33;immunity orf_72 |
| KX619651 | Mycobacterium phage Roosevelt | 51502 | 63.856 | Mycobacterium | Group I | Backyardiganvirus | Backyardiganvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Backyardiganvirus | Backyardiganvirus peaches | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_31;immunity orf_63 |
| KX620748 | Propionibacterium phage Anatole | 35284 | 64.431 | Propionibacterium | Group I | Anatolevirus | Anatolevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Propionibacterium freudenreichii TL110 | High-quality | High-quality | 98.150 | AAI-based (high-confidence) | Anatolevirus | Anatolevirus anatole | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_24;immunity orf_26;antirepressor orf_27;antirepressor orf_28 |
| KX620749 | Propionibacterium phage B3 | 35948 | 64.424 | Propionibacterium | Group I | Anatolevirus | Anatolevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Propionibacterium freudenreichii TL110 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Anatolevirus | Anatolevirus B3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_24;antirepressor orf_28 |
| KX620750 | Propionibacterium phage B22 | 37219 | 65.450 | Propionibacterium | Group I | Doucettevirus | Doucettevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Propionibacterium freudenreichii TL110 | High-quality | High-quality | 98.560 | AAI-based (high-confidence) | Doucettevirus | Doucettevirus B22 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_29;immunity orf_31;antirepressor orf_33 |
| KX620751 | Propionibacterium phage Doucette | 37429 | 65.583 | Propionibacterium | Group I | Doucettevirus | Doucettevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Propionibacterium freudenreichii TL110 | High-quality | High-quality | 99.080 | AAI-based (high-confidence) | Doucettevirus | Doucettevirus doucette | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_29;immunity orf_31;antirepressor orf_33 |
| KX620752 | Propionibacterium phage E1 | 35209 | 64.421 | Propionibacterium | Group I | Anatolevirus | Anatolevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Propionibacterium freudenreichii TL110 | High-quality | High-quality | 97.940 | AAI-based (high-confidence) | Anatolevirus | Anatolevirus anatole | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_24;immunity orf_26;antirepressor orf_27;antirepressor orf_28 |
| KX620753 | Propionibacterium phage E6 | 38067 | 65.201 | Propionibacterium | Group I | Doucettevirus | Doucettevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Propionibacterium freudenreichii TL110 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Doucettevirus | Doucettevirus E6 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_27;immunity orf_29;antirepressor orf_30;antirepressor orf_34 |
| KX620754 | Propionibacterium phage G4 | 38555 | 65.706 | Propionibacterium | Group I | Doucettevirus | Doucettevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Propionibacterium freudenreichii TL110 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Doucettevirus | Doucettevirus G4 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_29;antirepressor orf_33 |