INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
AY954964	Staphylococcus phage 29	42802	35.375	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	99.510	AAI-based (high-confidence)	Phietavirus	Phietavirus pv29	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_30;antirepressor orf_39;integrase orf_61
AY954965	Staphylococcus phage 52A	41690	35.534	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	97.130	AAI-based (high-confidence)	Phietavirus	Phietavirus pv52a	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_30;cro orf_35;antirepressor orf_36;integrase orf_57
AY954966	Staphylococcus phage 88	43231	35.470	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phietavirus	Phietavirus pv88	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_30;antirepressor orf_35;integrase orf_64
AY954967	Staphylococcus phage 92	42431	35.722	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	98.910	AAI-based (high-confidence)	Phietavirus	Phietavirus pv92	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_30;cro orf_32;cro orf_33;antirepressor orf_34;integrase orf_62
AY954968	Staphylococcus phage X2	43440	35.958	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phietavirus	Phietavirus X2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_29;antirepressor orf_39;integrase orf_64
AY954969	Staphylococcus phage G1	138715	30.388	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	97.960	AAI-based (high-confidence)	Kayvirus	Kayvirus G1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
AY954970	Staphylococcus phage Twort	130706	30.261	Staphylococcus	Group I	Twortvirus	Twortvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	93.490	AAI-based (high-confidence)	Twortvirus	Twortvirus twort	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
AY962392	Aeromonas phage 31	172963	43.913	Aeromonas	Group I	Biquartavirus	Biquartavirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Aeromonas salmonicida	High-quality	High-quality	100.000	AAI-based (high-confidence)	Biquartavirus	Biquartavirus 44RR2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
AY967407	Escherichia phage RB43	180500	43.199	Escherichia	Group I	Pseudotevenvirus	Pseudotevenvirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pseudotevenvirus	Pseudotevenvirus RB43	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
AY986977	Xanthomonas phage Xp15	55770	51.888	Xanthomonas	Group I	Alachuavirus	Alachuavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Alachuavirus	Alachuavirus Xp15	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_50