Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KX379668Lactococcus phage 4R16L23091334.574LactococcusGroup I SkunavirusSkunavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactococcus lactisHigh-qualityHigh-quality100.000AAI-based (high-confidence) SkunavirusSkunavirus sv42Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX379669Lactococcus phage 10W22S3093434.939LactococcusGroup I SkunavirusSkunavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactococcus lactisHigh-qualityHigh-quality100.000AAI-based (high-confidence) SkunavirusSkunavirus sv3R16SCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX379670Lactococcus phage 19W07F3089034.681LactococcusGroup I SkunavirusSkunavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactococcus lactisHigh-qualityHigh-quality100.000AAI-based (high-confidence) SkunavirusSkunavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX379671Lactococcus phage 13W11L2995234.709LactococcusGroup I SkunavirusSkunavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactococcus lactisHigh-qualityHigh-quality98.730AAI-based (high-confidence) SkunavirusSkunavirus sv13W11LCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX379672Lactococcus phage 16W12L3278234.766LactococcusGroup I SkunavirusSkunavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactococcus lactisHigh-qualityHigh-quality100.000AAI-based (high-confidence) SkunavirusSkunavirus sv16W23Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX379673Lactococcus phage MW18L3301334.814LactococcusGroup I SkunavirusSkunavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Lactococcus lactisHigh-qualityHigh-quality100.000AAI-based (high-confidence) SkunavirusSkunavirus sv16W23Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX397280Phage MedPE-SWcel-C564526055.508UnspecifiedGroup I KafavirusKafavirusUnclassifiedUnclassifiedAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria alphaproteobacteriaCompleteHigh-quality100.000DTR (high-confidence) KafavirusKafavirus SWcelC56Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX397364Erwinia phage vB_EamM_Asesino24629051.211ErwiniaGroup I ErskinevirusErskinevirusUnclassifiedChimalliviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Erwinia amylovora ATCC 29780High-qualityHigh-quality100.000AAI-based (high-confidence) ErskinevirusErskinevirus asesinoCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX397365Erwinia phage vB_EamM_Caitlin24114752.170ErwiniaGroup I MachinavirusMachinavirusUnclassifiedChimalliviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Erwinia amylovora ATCC 29780High-qualityHigh-quality99.340AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
KX397366Erwinia phage vB_EamM_ChrisDB24484049.414ErwiniaGroup I MachinavirusMachinavirusUnclassifiedChimalliviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Erwinia amylovora ATCC 29780High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
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