INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AY682195 | Lactobacillus phage LP65 | 131522 | 37.321 | Lactobacillus | Group I | Salchichonvirus | Salchichonvirus | Unclassified | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Salchichonvirus | Salchichonvirus LP65 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AY692264 | Escherichia phage T5 | 113238 | 39.204 | Escherichia | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tequintavirus | Tequintavirus T5 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| AY699705 | Streptococcus phage 2972 | 34704 | 40.151 | Streptococcus | Group I | Brussowvirus | Brussowvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus | High-quality | High-quality | 91.540 | AAI-based (high-confidence) | Brussowvirus | Brussowvirus bv2972 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_29 |
| AY701338 | Bacillus phage GIL16c | 14844 | 40.070 | Bacillus | Group I | Betatectivirus | Betatectivirus | Unclassified | Tectiviridae | Kalamavirales | Tectiliviricetes | Preplasmiviricota | Bamfordvirae | Varidnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Betatectivirus | Betatectivirus GIL16 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| AY714348 | Vibrio phage KSF1 | 7107 | 44.379 | Vibrio | Group II | Capistrivirus | Capistrivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Unspecified | High-quality | High-quality | 99.320 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| AY722806 | Thermoproteus tenax spherical virus 1 | 20933 | 49.529 | Thermoproteus | Unclassified | Alphaglobulovirus | Alphaglobulovirus | Unclassified | Globuloviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unspecified | Low-quality | Genome-fragment | 10.390 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AY730274 | Salmonella phage SS3e | 40793 | 50.080 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | High-quality | High-quality | 95.060 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus SS3e | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AY736146 | Enterobacteria phage ES18 | 46900 | 48.593 | Enterobacteria | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.370 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_34;cro orf_53 |
| AY739900 | Lactobacillus phage LL-Ku | 31080 | 41.602 | Lactobacillus | Group I | Cequinquevirus | Cequinquevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus delbrueckii subsp. lactis strain LL78 | High-quality | High-quality | 97.300 | AAI-based (high-confidence) | Cequinquevirus | Cequinquevirus LLKu | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AY751298 | Enterobacteria phage ID11 | 5577 | 45.939 | Enterobacteria | Group II | Gequatrovirus | Gequatrovirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 96.460 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown |