INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KX227757 | Bacillus phage PfEFR-4 | 43223 | 35.437 | Bacillus | Group I | Hubeivirus | Hubeivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus EFR-4 | High-quality | High-quality | 98.740 | AAI-based (high-confidence) | Hubeivirus | Hubeivirus PfEFR4 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_24;antirepressor orf_35;integrase orf_62 |
| KX227758 | Bacillus phage PfNC7401 | 48055 | 36.552 | Bacillus | Group I | Cecivirus | Cecivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus NC7401/2455 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | antirepressor orf_65 |
| KX227759 | Bacillus phage PfIS075 | 48709 | 36.484 | Bacillus | Group I | Cecivirus | Cecivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus IS075 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | antirepressor orf_55 |
| KX227760 | Bacillus phage PfEFR-5 | 43773 | 35.392 | Bacillus | Group I | Hubeivirus | Hubeivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus cereus EFR-5 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Hubeivirus | Hubeivirus PfEFR4 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_24;integrase orf_33;antirepressor orf_36;integrase orf_63 |
| KX228399 | Clostridium phage CDKM9 | 49822 | 28.975 | Clostridium | Group I | Colneyvirus | Colneyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile strain CD105HE1 ribotype 076 | High-quality | High-quality | 99.920 | AAI-based (high-confidence) | Colneyvirus | Colneyvirus CDKM9 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_41;antirepressor orf_47 |
| KX228400 | Clostridium phage CDKM15 | 50605 | 28.683 | Clostridium | Group I | Colneyvirus | Colneyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile strain CD105HE1 ribotype 076 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Colneyvirus | Colneyvirus CDKM15 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_46;antirepressor orf_52 |
| KX229736 | Campylobacter phage PC5 | 131095 | 26.139 | Campylobacter | Group I | Fletchervirus | Fletchervirus | Unclassified | Connertonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Campylobacter jejuni LBA65 | High-quality | High-quality | 98.850 | AAI-based (high-confidence) | Fletchervirus | Fletchervirus PC5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KX231828 | Enterobacter phage Arya | 41918 | 54.108 | Enterobacter | Group I | Aryavirus | Aryavirus | Iiscvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter sp. CT7 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Aryavirus | Aryavirus arya | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KX231829 | Enterobacter phage Tyrion | 41760 | 50.587 | Enterobacter | Group I | Uetakevirus | Uetakevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter sp. CT7 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | antirepressor orf_24;integrase orf_31 |
| KX232515 | Staphylococcus phage 3 AJ-2017 | 43922 | 33.277 | Staphylococcus | Group I | Peeveelvirus | Peeveelvirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus 5sau489 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Peeveelvirus | Peeveelvirus pv3AJ2017 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_31;antirepressor orf_54;cro orf_58;integrase orf_62 |