INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KX160220 | Lactococcus phage Dub35A | 35188 | 35.381 | Lactococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_2;cro orf_11 |
| KX171208 | Pseudomonas phage vB_Pae436M-8 | 66922 | 55.757 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pbunavirus | Pbunavirus KTN6 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KX171209 | Pseudomonas phage vB_Pae575P-3 | 72728 | 54.724 | Pseudomonas | Group I | Litunavirus | Litunavirus | Migulavirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas sp. | High-quality | High-quality | 99.860 | AAI-based (high-confidence) | Litunavirus | Litunavirus Pae575p3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KX171210 | Pseudomonas phage vB_Pae1396P-5 | 72508 | 54.724 | Pseudomonas | Group I | Litunavirus | Litunavirus | Migulavirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas sp. | High-quality | High-quality | 99.560 | AAI-based (high-confidence) | Litunavirus | Litunavirus Pae575p3 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KX171211 | Salmonella phage vB_SenM-2 | 158986 | 44.706 | Salmonella | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kuttervirus | Kuttervirus Det7 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KX171212 | Staphylococcus phage vB_SscM-1 | 139681 | 31.827 | Staphylococcus | Group I | Sciuriunavirus | Sciuriunavirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Sciuriunavirus | Sciuriunavirus SscM1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KX171213 | Staphylococcus phage vB_SscM-2 | 139682 | 31.824 | Staphylococcus | Group I | Sciuriunavirus | Sciuriunavirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Sciuriunavirus | Sciuriunavirus SscM1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KX179905 | Ralstonia phage Rs551 | 7929 | 60.827 | Ralstonia | Group II | Habenivirus | Habenivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Ralstonia solanacearum UW551 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KX181651 | Xanthomonas phage Xf109 | 7190 | 59.597 | Xanthomonas | Group II | Xylivirus | Xylivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Xanthomonas oryzae ATCC 35933 | High-quality | High-quality | 95.290 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| KX190832 | Bacillus phage vB_BtS_BMBtp13 | 26471 | 35.001 | Bacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis BGSC 4R1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_3 |