INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KX147229 | Bacillus phage Belinda | 162308 | 38.784 | Bacillus | Group I | Wphvirus | Wphvirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis DSM350 | Complete | High-quality | 100.000 | DTR (high-confidence) | Wphvirus | Wphvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KX156152 | Bacillus phage Smudge | 162040 | 38.755 | Bacillus | Group I | Wphvirus | Wphvirus | Bastillevirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus thuringiensis DSM-350 | Complete | High-quality | 100.000 | DTR (high-confidence) | Wphvirus | Wphvirus megatron | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KX156762 | Staphylococcus phage vB_SauS_IMEP5 | 44677 | 34.261 | Staphylococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_36 |
| KX159477 | Mycobacterium phage Gattaca | 65237 | 63.349 | Mycobacterium | Group I | Marvinvirus | Marvinvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.550 | AAI-based (high-confidence) | Marvinvirus | Marvinvirus mosmoris | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KX160204 | Lactococcus phage 38502 | 34067 | 35.392 | Lactococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | cro orf_1;cro orf_2;antirepressor orf_3;antirepressor orf_6 |
| KX160205 | Lactococcus phage 49801 | 35800 | 35.869 | Lactococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 96.450 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | cro orf_1;antirepressor orf_3;antirepressor orf_4;antirepressor orf_5;cro orf_7;antirepressor orf_8 |
| KX160206 | Lactococcus phage 50902 | 30745 | 36.045 | Lactococcus | Group I | Vedamuthuvirus | Vedamuthuvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Vedamuthuvirus | Vedamuthuvirus vv50902 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_2;antirepressor orf_4 |
| KX160207 | Lactococcus phage 53801 | 36378 | 36.264 | Lactococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 99.930 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | cro orf_4;cro orf_5;antirepressor orf_6;antirepressor orf_7 |
| KX160208 | Lactococcus phage 53802 | 36445 | 35.967 | Lactococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | antirepressor orf_3;antirepressor orf_8 |
| KX160209 | Lactococcus phage 58502 | 30238 | 36.203 | Lactococcus | Group I | Vedamuthuvirus | Vedamuthuvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis | High-quality | High-quality | 98.820 | AAI-based (high-confidence) | Vedamuthuvirus | Vedamuthuvirus P1045 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | cro orf_2;antirepressor orf_3;antirepressor orf_6 |