Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KX119198Helicobacter phage Pt5322G2834136.908HelicobacterGroup I SchmidvirusSchmidvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Helicobacter pyloriHigh-qualityHigh-quality99.470AAI-based (high-confidence) SchmidvirusSchmidvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_2
KX119199Helicobacter phage Pt5771G2980137.039HelicobacterGroup I SchmidvirusSchmidvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Helicobacter pyloriHigh-qualityHigh-quality100.000AAI-based (high-confidence) SchmidvirusSchmidvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_2
KX119200Helicobacter phage FrMEG235U3123637.255HelicobacterGroup I SchmidvirusSchmidvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Helicobacter pyloriHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_2;integrase orf_3
KX119201Helicobacter phage FrANT170U3120037.234HelicobacterGroup I SchmidvirusSchmidvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Helicobacter pyloriHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_2;integrase orf_3
KX119202Helicobacter phage Pt1293U3007136.933HelicobacterGroup I SchmidvirusSchmidvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Helicobacter pyloriHigh-qualityHigh-quality100.000AAI-based (high-confidence) SchmidvirusSchmidvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_3;antirepressor orf_32
KX119203Helicobacter phage PtB89G2736337.405HelicobacterGroup I SchmidvirusSchmidvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Helicobacter pyloriHigh-qualityHigh-quality96.110AAI-based (high-confidence) SchmidvirusSchmidvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_3
KX119204Helicobacter phage Sw577G2690636.297HelicobacterGroup I SchmidvirusSchmidvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Helicobacter pyloriHigh-qualityHigh-quality94.220AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_4
KX119205Helicobacter phage DeM53M2806836.223HelicobacterGroup I SchmidvirusSchmidvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Helicobacter pyloriHigh-qualityHigh-quality97.640AAI-based (high-confidence) SchmidvirusSchmidvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_3
KX119206Helicobacter phage UKEN32U2988236.691HelicobacterGroup I SchmidvirusSchmidvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Helicobacter pyloriHigh-qualityHigh-quality100.000AAI-based (high-confidence) SchmidvirusSchmidvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_3
KX129925Pseudomonas phage NP15856658.399PseudomonasGroup I NipunavirusNipunavirusQueuovirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality100.000AAI-based (high-confidence) NipunavirusNipunavirus NP1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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