Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KX077896Streptococcus phage phiJH1301-26719538.634StreptococcusGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus suis JH1301CompleteHigh-quality100.000Provirus (medium-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_11
KX078568Morganella phage vB_MmoP_MP23961646.913MorganellaGroup I MinipunavirusMinipunavirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Morganella sp.CompleteHigh-quality100.000DTR (high-confidence) MinipunavirusMinipunavirus MP2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX078569Morganella phage vB_MmoM_MP116320134.747MorganellaGroup I GualtarvirusGualtarvirusUnclassifiedStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Morganella sp.High-qualityHigh-quality98.720AAI-based (high-confidence) GualtarvirusGualtarvirus mp1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX098389Erwinia phage vB_EamP_Frozen7514746.920ErwiniaGroup I JohnsonvirusJohnsonvirusErskinevirinaeSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedHigh-qualityHigh-quality99.280AAI-based (high-confidence) JohnsonvirusJohnsonvirus frozenCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX098390Erwinia phage vB_EamP_Rexella7544846.905ErwiniaGroup I JohnsonvirusJohnsonvirusErskinevirinaeSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Erwinia amylovoraHigh-qualityHigh-quality99.680AAI-based (high-confidence) JohnsonvirusJohnsonvirus frozenCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX098391Erwinia phage vB_EamP_Gutmeister7117346.928ErwiniaGroup I JohnsonvirusJohnsonvirusErskinevirinaeSchitoviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Erwinia amylovoraHigh-qualityHigh-quality94.030AAI-based (high-confidence) JohnsonvirusJohnsonvirus frozenCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KX119174Helicobacter phage UKEN31U3045636.715HelicobacterGroup I SchmidvirusSchmidvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Helicobacter pyloriHigh-qualityHigh-quality100.000AAI-based (high-confidence) SchmidvirusSchmidvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_3
KX119175Helicobacter phage Pt22899G3007837.220HelicobacterGroup I SchmidvirusSchmidvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Helicobacter pyloriHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_3
KX119176Helicobacter phage Pt1846U2796036.996HelicobacterGroup I SchmidvirusSchmidvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Helicobacter pyloriHigh-qualityHigh-quality98.210AAI-based (high-confidence) SchmidvirusSchmidvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_2
KX119177Helicobacter phage SwA626G3097736.550HelicobacterGroup I SchmidvirusSchmidvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Helicobacter pyloriHigh-qualityHigh-quality100.000AAI-based (high-confidence) SchmidvirusSchmidvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_4
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