INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KU998254	Gordonia phage Kampe	80649	47.006	Gordonia	Group I	Cratervirus	Cratervirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	Complete	High-quality	100.000	DTR (high-confidence)	Cratervirus	Cratervirus orchid	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_70;cro orf_74
KU998255	Gordonia phage McGonagall	17119	68.614	Gordonia	Group I	Mcgonagallvirus	Mcgonagallvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia neofelifaecis NRRL 59395	High-quality	High-quality	100.000	AAI-based (high-confidence)	Mcgonagallvirus	Mcgonagallvirus macgonagall	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_18
KU998256	Gordonia phage Jeanie	17118	68.618	Gordonia	Group I	Mcgonagallvirus	Mcgonagallvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia neofelifaecis NRRL 59395	High-quality	High-quality	99.990	AAI-based (high-confidence)	Mcgonagallvirus	Mcgonagallvirus macgonagall	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_18
KX009778	Escherichia phage UFV-AREG1	167231	35.347	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus ufvareg1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KX011028	Staphylococcus phage pSco-10	101986	31.113	Staphylococcus	Group I	Twortvirinae	Unclassified	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus cohnii	Medium-quality	Genome-fragment	72.090	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
KX011169	Bacillus phage SalinJah	161140	38.720	Bacillus	Group I	Wphvirus	Wphvirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus thuringiensis Berliner 1915, DSM 350	Complete	High-quality	100.000	DTR (high-confidence)	Wphvirus	Wphvirus BPS13	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KX015770	Salmonella phage phSE-2	49167	42.889	Salmonella	Group I	Tlsvirus	Tlsvirus	Tempevirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella typhimurium ATCC 13111	High-quality	High-quality	97.540	AAI-based (high-confidence)	Tlsvirus	Tlsvirus phSE2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_10
KX015771	Salmonella phage phSE-5	49178	42.881	Salmonella	Group I	Tlsvirus	Tlsvirus	Tempevirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella typhimurium ATCC 13111	High-quality	High-quality	97.560	AAI-based (high-confidence)	Tlsvirus	Tlsvirus phSE2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_27
KX017520	Salmonella phage 64795_sal3	45342	45.596	Salmonella	Group I	Saltrevirus	Saltrevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. Typhimurium	High-quality	High-quality	96.590	AAI-based (high-confidence)	Saltrevirus	Saltrevirus sv64795sal3	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KX017521	Salmonella phage 118970_sal2	114180	40.278	Salmonella	Group I	Epseptimavirus	Epseptimavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. Enteritidis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Epseptimavirus	Epseptimavirus 118970sal2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic