INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KU998234	Gordonia phage Wizard	58308	67.943	Gordonia	Group I	Wizardvirus	Wizardvirus	Frickvirinae	Stackebrandtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	98.340	AAI-based (high-confidence)	Wizardvirus	Wizardvirus wizard	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_21;integrase orf_43;integrase orf_46
KU998235	Gordonia phage Bowser	46570	67.112	Gordonia	Group I	Bowservirus	Bowservirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	99.480	AAI-based (high-confidence)	Bowservirus	Bowservirus bowser	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_37;integrase orf_39;immunity orf_40
KU998236	Gordonia phage Blueberry	54990	67.030	Gordonia	Group I	Jujuvirus	Jujuvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jujuvirus	Jujuvirus azula	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_37;immunity orf_41;cro orf_44;antirepressor orf_46
KU998237	Gordonia phage Vendetta	45858	66.135	Gordonia	Group I	Vendettavirus	Vendettavirus	Ruthgordonvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Vendettavirus	Vendettavirus vendetta	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_37;immunity orf_39
KU998238	Gordonia phage Splinter	45858	66.130	Gordonia	Group I	Vendettavirus	Vendettavirus	Ruthgordonvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Vendettavirus	Vendettavirus vendetta	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_37;immunity orf_39
KU998239	Gordonia phage Cozz	46600	60.043	Gordonia	Group I	Emalynvirus	Emalynvirus	Ceeteevirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Emalynvirus	Emalynvirus cozz	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU998240	Gordonia phage Woes	73752	59.125	Gordonia	Group I	Woesvirus	Woesvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	Complete	High-quality	100.000	DTR (high-confidence)	Woesvirus	Woesvirus woes	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU998241	Gordonia phage Monty	75680	58.948	Gordonia	Group I	Montyvirus	Montyvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	Complete	High-quality	100.000	DTR (high-confidence)	Montyvirus	Montyvirus monty	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU998242	Gordonia phage Demosthenes	74073	59.255	Gordonia	Group I	Demosthenesvirus	Demosthenesvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	Complete	High-quality	100.000	DTR (high-confidence)	Demosthenesvirus	Demosthenesvirus demosthenes	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU998243	Gordonia phage Kvothe	75462	59.480	Gordonia	Group I	Demosthenesvirus	Demosthenesvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	Complete	High-quality	100.000	DTR (high-confidence)	Demosthenesvirus	Demosthenesvirus katyusha	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic