INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KU761559	Mycobacterium phage ArcherNM	52561	64.177	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.950	AAI-based (high-confidence)	Fromanvirus	Fromanvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_65
KU761955	Pseudomonas phage phiMK	93129	49.288	Pseudomonas	Group I	Pakpunavirus	Pakpunavirus	Skurskavirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PAO	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pakpunavirus	Pakpunavirus MK	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU831549	Bacillus phage vB_BsuP-Goe1	18379	37.494	Bacillus	Group I	Beecentumtrevirus	Beecentumtrevirus	Picovirinae	Salasmaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus subtilis	High-quality	High-quality	94.810	AAI-based (high-confidence)	Beecentumtrevirus	Beecentumtrevirus Goe1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU836751	Bacillus phage Leo2	48589	42.086	Bacillus	Group I	Andromedavirus	Andromedavirus	Unclassified	Ehrlichviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus pumilus	High-quality	High-quality	98.230	AAI-based (high-confidence)	Andromedavirus	Andromedavirus leo2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU847400	Bacillus phage Crookii	154012	37.165	Bacillus	Group I	Wphvirus	Wphvirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus anthracis	High-quality	High-quality	96.390	AAI-based (high-confidence)	Wphvirus	Wphvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KU848186	Lactobacillus phage PLE3	41005	44.931	Lactobacillus	Group I	Pleetrevirus	Pleetrevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus casei BL23	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pleetrevirus	Pleetrevirus PLE3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_25
KU848187	Lactobacillus phage PLE2	35068	45.326	Lactobacillus	Group I	Pleeduovirus	Pleeduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus casei BL23	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pleeduovirus	Pleeduovirus PLE2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_19;integrase orf_22
KU862660	Pseudomonas phage phiPMW	103218	45.149	Pseudomonas	Group I	Plaisancevirus	Plaisancevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas putida PpG1	High-quality	High-quality	100.000	AAI-based (high-confidence)	Plaisancevirus	Plaisancevirus PMW	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU865302	Mycobacterium phage Brocalys	54751	61.776	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	95.080	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_33;immunity orf_38;cro orf_39;antirepressor orf_40
KU865303	Mycobacterium phage TeardropMSU	74896	63.041	Mycobacterium	Group I	Kostyavirus	Kostyavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.380	AAI-based (high-confidence)	Kostyavirus	Kostyavirus toto	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_48;immunity orf_51