INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KU055616	Mycobacterium phage Iracema64	51637	64.014	Mycobacterium	Group I	Backyardiganvirus	Backyardiganvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Backyardiganvirus	Backyardiganvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;immunity orf_63
KU057941	Clostridium phage CDSH1	41619	30.815	Clostridium	Group I	Leicestervirus	Leicestervirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Clostridium difficile AIU	High-quality	High-quality	100.000	AAI-based (high-confidence)	Leicestervirus	Leicestervirus CD382	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	parA orf_32;cro orf_37;integrase orf_50
KU064779	Pseudomonas phage PPPL-1	41149	57.003	Pseudomonas	Group I	Hennigervirus	Hennigervirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas syringae pv. actinidiae KBE9	High-quality	High-quality	100.000	AAI-based (high-confidence)	Hennigervirus	Hennigervirus PPPL1	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KU130126	Pseudomonas phage vB_PsyM_KIL1	90552	44.811	Pseudomonas	Group I	Flaumdravirus	Flaumdravirus	Gorskivirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas syringae pv. porri LMG 28495	High-quality	High-quality	93.780	AAI-based (high-confidence)	Flaumdravirus	Flaumdravirus KIL4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU130127	Pseudomonas phage vB_PsyM_KIL2	92466	44.786	Pseudomonas	Group I	Flaumdravirus	Flaumdravirus	Gorskivirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas syringae pv. porri LMG 28495	High-quality	High-quality	95.740	AAI-based (high-confidence)	Flaumdravirus	Flaumdravirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU130128	Pseudomonas phage vB_PsyM_KIL3	92068	44.727	Pseudomonas	Group I	Flaumdravirus	Flaumdravirus	Gorskivirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas syringae pv. porri LMG 28495	High-quality	High-quality	95.350	AAI-based (high-confidence)	Flaumdravirus	Flaumdravirus KIL4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU130129	Pseudomonas phage vB_PsyM_KIL4	92816	44.897	Pseudomonas	Group I	Flaumdravirus	Flaumdravirus	Gorskivirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas syringae pv. porri LMG 28495	High-quality	High-quality	96.150	AAI-based (high-confidence)	Flaumdravirus	Flaumdravirus KIL2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU130130	Pseudomonas phage vB_PsyM_KIL5	93385	44.971	Pseudomonas	Group I	Flaumdravirus	Flaumdravirus	Gorskivirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas syringae pv. porri LMG 28495	High-quality	High-quality	97.700	AAI-based (high-confidence)	Flaumdravirus	Flaumdravirus KIL2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU130131	Pseudomonas phage vB_PsyM_KIL3b	92095	44.721	Pseudomonas	Group I	Flaumdravirus	Flaumdravirus	Gorskivirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas syringae pv. porri LMG 28495	High-quality	High-quality	95.380	AAI-based (high-confidence)	Flaumdravirus	Flaumdravirus KIL4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KU160494	Vibrio phage vB_VmeM-32	199912	35.611	Vibrio	Group I	Emmerichvirinae	Unclassified	Emmerichvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio metschnikovii DSM 29715	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_86