INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AY129330 | Mycobacterium phage Che8 | 59472 | 61.310 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycolicobacterium smegmatis mc#155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus che8 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_45;immunity orf_47;antirepressor orf_49 |
| AY129331 | Mycobacterium phage Cjw1 | 75931 | 63.115 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 99.720 | AAI-based (high-confidence) | Kostyavirus | Kostyavirus CJW1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_52;immunity orf_55 |
| AY129332 | Mycobacterium phage Bxz2 | 50913 | 64.184 | Mycobacterium | Group I | Microwolfvirus | Microwolfvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Microwolfvirus | Microwolfvirus Bxz2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32;immunity orf_69 |
| AY129333 | Mycobacterium phage Che9c | 57050 | 65.378 | Mycobacterium | Group I | Chenonavirus | Chenonavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Chenonavirus | Chenonavirus Che9c | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_39;antirepressor orf_46 |
| AY129334 | Mycobacterium phage Rosebush | 67480 | 68.957 | Mycobacterium | Group I | Rosebushvirus | Rosebushvirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 99.870 | AAI-based (high-confidence) | Rosebushvirus | Rosebushvirus rosebush | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AY129335 | Mycobacterium phage Corndog | 69777 | 65.384 | Mycobacterium | Group I | Corndogvirus | Corndogvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 96.940 | AAI-based (high-confidence) | Corndogvirus | Corndogvirus corndog | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AY129336 | Mycobacterium phage Che9d | 56275 | 60.901 | Mycobacterium | Group I | Avanivirus | Avanivirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Avanivirus | Avanivirus Che9d | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_49;antirepressor orf_53 |
| AY129337 | Mycobacterium phage Bxz1 | 156102 | 64.770 | Mycobacterium | Group I | Bixzunavirus | Bixzunavirus | Ceeclamvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 97.850 | AAI-based (high-confidence) | Bixzunavirus | Bixzunavirus Bxz1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AY129338 | Mycobacterium phage Omega | 110865 | 61.375 | Mycobacterium | Group I | Omegavirus | Omegavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium sp. | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | Omegavirus | Omegavirus omega | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_82 |
| AY129339 | Mycobacterium phage Barnyard | 70797 | 57.313 | Mycobacterium | Group I | Barnyardvirus | Barnyardvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Barnyardvirus | Barnyardvirus barnyard | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |