INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KT001914 | Caulobacter phage Seuss | 85138 | 61.403 | Caulobacter | Group I | Seussvirus | Seussvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter crescentus | Complete | High-quality | 100.000 | DTR (high-confidence) | Seussvirus | Seussvirus seuss | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT001915 | Citrobacter phage Merlin | 172733 | 38.763 | Citrobacter | Group I | Moonvirus | Moonvirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Moonvirus | Moonvirus merlin | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT001916 | Citrobacter phage Michonne | 90000 | 38.849 | Citrobacter | Group I | Mooglevirus | Mooglevirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Mooglevirus | Mooglevirus mordin | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| KT001917 | Escherichia phage Murica | 135391 | 43.614 | Escherichia | Group I | Vequintavirus | Vequintavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 96.520 | AAI-based (high-confidence) | Vequintavirus | Vequintavirus murica | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT001918 | Klebsiella phage Matisse | 176081 | 41.774 | Klebsiella | Group I | Slopekvirus | Slopekvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 98.840 | AAI-based (high-confidence) | Slopekvirus | Slopekvirus matisse | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT001919 | Klebsiella phage Miro | 176055 | 41.779 | Klebsiella | Group I | Slopekvirus | Slopekvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 98.820 | AAI-based (high-confidence) | Slopekvirus | Slopekvirus matisse | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT001920 | Klebsiella phage Sushi | 48754 | 50.769 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 98.410 | AAI-based (high-confidence) | Webervirus | Webervirus sushi | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT004677 | Mycobacterium phage UnionJack | 49158 | 59.982 | Mycobacterium | Group I | Benedictvirus | Benedictvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterum smegmatis mc2 155 | High-quality | High-quality | 97.330 | AAI-based (high-confidence) | Benedictvirus | Benedictvirus unionjack | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_27;immunity orf_67 |
| KT008108 | Yersinia phage phiYe-F10 | 39210 | 50.699 | Yersinia | Group I | Teetrevirus | Teetrevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia enterocolitica | Complete | High-quality | 100.000 | DTR (high-confidence) | Teetrevirus | Teetrevirus YeF10 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KT020852 | Mycobacterium phage NoSleep | 74655 | 62.983 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.060 | AAI-based (high-confidence) | Kostyavirus | Kostyavirus CJW1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_53;immunity orf_56 |