INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KR905068	Lactobacillus phage iA2	34155	45.639	Lactobacillus	Group I	Iaduovirus	Iaduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus paracasei	High-quality	High-quality	99.070	AAI-based (high-confidence)	Iaduovirus	Iaduovirus iA2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_30
KR905069	Lactobacillus phage iLp84	39399	45.085	Lactobacillus	Group I	Pleetrevirus	Pleetrevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus paracasei	High-quality	High-quality	95.410	AAI-based (high-confidence)	Pleetrevirus	Pleetrevirus iLp84	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_25
KR905070	Lactobacillus phage iLp1308	34176	45.049	Lactobacillus	Group I	Colunavirus	Colunavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus paracasei	High-quality	High-quality	90.510	AAI-based (high-confidence)	Colunavirus	Colunavirus iLp1308	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_20;cro orf_43
KR908644	Staphylococcus phage IME-SA119	141028	30.326	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	99.600	AAI-based (high-confidence)	Kayvirus	Kayvirus G1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR935213	Rhodobacter phage RcTitan	44496	55.140	Rhodobacter	Group I	Titanvirus	Titanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodobacter capsulatus YW1	High-quality	High-quality	100.000	AAI-based (high-confidence)	Titanvirus	Titanvirus rctitan	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR935214	Mycobacterium phage Kimberlium	56826	61.440	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.710	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus kimberlium	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_43;immunity orf_45;antirepressor orf_47;integrase orf_48
KR935215	Rhodobacter phage RcSpartan	44194	54.885	Rhodobacter	Group I	Titanvirus	Titanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodobacter capsulatus YW1	High-quality	High-quality	99.880	AAI-based (high-confidence)	Titanvirus	Titanvirus rcspartan	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR935216	Rhodobacter phage RcRhea	36065	65.446	Rhodobacter	Group I	Cronusvirus	Cronusvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodobacter capsulatus YW1	High-quality	High-quality	99.960	AAI-based (high-confidence)	Cronusvirus	Cronusvirus cronus	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR935217	Rhodobacter phage RcCronus	35985	65.427	Rhodobacter	Group I	Cronusvirus	Cronusvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhodobacter capsulatus YW1	High-quality	High-quality	99.730	AAI-based (high-confidence)	Cronusvirus	Cronusvirus cronus	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KR997929	Mycobacterium phage Barriga	52643	63.395	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fromanvirus	Fromanvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_36;immunity orf_76