INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KR537871 | Stenotrophomonas phage vB_SmaS-DLP_2 | 42593 | 53.715 | Stenotrophomonas | Group I | Septimatrevirus | Septimatrevirus | Jondennisvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia D1585 | High-quality | High-quality | 99.470 | AAI-based (high-confidence) | Septimatrevirus | Septimatrevirus DLP2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR537872 | Stenotrophomonas phage vB_SmaS-DLP_1 | 42887 | 53.711 | Stenotrophomonas | Group I | Septimatrevirus | Septimatrevirus | Jondennisvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia D1585 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Septimatrevirus | Septimatrevirus DLP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR560069 | Stenotrophomonas phage IME-SM1 | 159514 | 54.142 | Stenotrophomonas | Group I | Menderavirus | Menderavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas sp. | High-quality | High-quality | 99.930 | AAI-based (high-confidence) | Menderavirus | Menderavirus IMESM1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR604693 | Pectobacterium phage Peat1 | 45633 | 48.862 | Pectobacterium | Group I | Phimunavirus | Phimunavirus | Corkvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium atrosepticum | Complete | High-quality | 100.000 | DTR (high-confidence) | Phimunavirus | Phimunavirus peat1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR698074 | Escherichia phage APECc02 | 135400 | 43.592 | Escherichia | Group I | Vequintavirus | Vequintavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 96.530 | AAI-based (high-confidence) | Vequintavirus | Vequintavirus APECc02 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KR704913 | Chimpanzee faeces associated microphage 1 | 4851 | 45.455 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Pan troglodytes | High-quality | High-quality | 98.540 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| KR704914 | Chimpanzee faeces associated microphage 2 | 5184 | 38.310 | Unspecified | Group II | Gokucipiengivirus | Gokucipiengivirus | Unclassified | Alphagokushoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Pan troglodytes | High-quality | High-quality | 98.670 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| KR704915 | Chimpanzee faeces associated microphage 3 | 5016 | 45.355 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Pan troglodytes | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| KR709302 | Staphylococcus phage 55-2 | 41898 | 35.742 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus JP8361 | High-quality | High-quality | 97.500 | AAI-based (high-confidence) | Phietavirus | Phietavirus pv55 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_4;antirepressor orf_8;integrase orf_31 |
| KR709303 | Staphylococcus phage 55-3 | 42309 | 35.645 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus JP8362 | High-quality | High-quality | 98.380 | AAI-based (high-confidence) | Phietavirus | Phietavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_4;antirepressor orf_8;integrase orf_33 |