INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
AP019522	Staphylococcus phage MR003	132152	29.960	Staphylococcus	Group I	Silviavirus	Silviavirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus RN4220	High-quality	High-quality	97.090	AAI-based (high-confidence)	Silviavirus	Silviavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
AP019524	Tenacibaculum phage PTm1	224680	29.744	Tenacibaculum	Group I	Shirahamavirus	Shirahamavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Tenacibaculum maritimum	High-quality	High-quality	99.520	AAI-based (high-confidence)	Shirahamavirus	Shirahamavirus PTm1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_200
AP019525	Tenacibaculum phage PTm5	226876	29.719	Tenacibaculum	Group I	Shirahamavirus	Shirahamavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Tenacibaculum maritimum	High-quality	High-quality	100.000	AAI-based (high-confidence)	Shirahamavirus	Shirahamavirus PTm1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_193
AP019527	Lactococcus phage phiQ1	59833	34.412	Lactococcus	Group I	Teubervirus	Teubervirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis subsp. cremoris	Complete	High-quality	100.000	DTR (high-confidence)	Teubervirus	Teubervirus Q1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_46
AP019535	Pseudomonas phage PA01	66220	55.402	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PAO1	Complete	High-quality	100.000	DTR (high-confidence)	Pbunavirus	Pbunavirus PA01	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
AP019559	Escherichia phage SP15	110964	39.134	Escherichia	Group I	Tequintavirus	Tequintavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O157:H7	High-quality	High-quality	98.200	AAI-based (high-confidence)	Tequintavirus	Tequintavirus SP15	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
AP019560	Staphylococcus phage SP120	40530	34.991	Staphylococcus	Group I	Coventryvirus	Coventryvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus pseudintermedius	High-quality	High-quality	100.000	AAI-based (high-confidence)	Coventryvirus	Coventryvirus SP120	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_21;antirepressor orf_26
AP019561	Staphylococcus phage SP197	41149	35.673	Staphylococcus	Group I	Coventryvirus	Coventryvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus pseudintermedius	High-quality	High-quality	100.000	AAI-based (high-confidence)	Coventryvirus	Coventryvirus SP197	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_53;cro orf_54;cro orf_55;antirepressor orf_60
AP019562	Staphylococcus phage SP276	40147	35.353	Staphylococcus	Group I	Coventryvirus	Coventryvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus pseudintermedius	High-quality	High-quality	100.000	AAI-based (high-confidence)	Coventryvirus	Coventryvirus SP276	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_16;antirepressor orf_21
AP046536	Metallosphaera turreted icosahedral virus	13941	45.442	Metallosphaera	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Metallosphaera hakonensis	Not-determined	Genome-fragment			New_genus	New_species	No hits were found with the default settings	lytic