INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
AB334721	Enterobacteria phage f1	6407	40.846	Enterobacteria	Group II	Inovirus	Inovirus	Unclassified	Inoviridae	Tubulavirales	Faserviricetes	Hofneiviricota	Loebvirae	Floreoviria	Unspecified	High-quality	High-quality	99.980	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	unknown
AB362338	Salmonella phage P22	41660	47.012	Salmonella	Group I	Lederbergvirus	Lederbergvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium strain LT2	High-quality	High-quality	100.000	AAI-based (high-confidence)	Lederbergvirus	Lederbergvirus P22	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_18;antirepressor orf_19;integrase orf_23;integrase orf_39;cro orf_45;antirepressor orf_62;integrase orf_66
AB366653	Ralstonia phage phiRSL1	231255	58.026	Ralstonia	Group I	Mieseafarmvirus	Mieseafarmvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Mieseafarmvirus	Mieseafarmvirus RSL1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
AB370205	Staphylococcus phage phiMR25	44342	34.326	Staphylococcus	Group I	Dubowvirus	Dubowvirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Dubowvirus	Dubowvirus MR25	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_6;antirepressor orf_7;integrase orf_39
AB370268	Staphylococcus phage phiMR11	43011	35.630	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phietavirus	Phietavirus MR11	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_1;cro orf_4;antirepressor orf_6;integrase orf_38
AB374228	Vibrio phage Kappa	33507	48.835	Vibrio	Group I	Longwoodvirus	Longwoodvirus	Unclassified	Peduoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	98.130	AAI-based (high-confidence)	Longwoodvirus	Longwoodvirus K139	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_1
AB426868	Salmonella phage P22	41660	47.012	Salmonella	Group I	Lederbergvirus	Lederbergvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium strain LT2	High-quality	High-quality	100.000	AAI-based (high-confidence)	Lederbergvirus	Lederbergvirus P22	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_18;antirepressor orf_19;integrase orf_23;integrase orf_39;cro orf_45;antirepressor orf_62;integrase orf_66
AB434711	Ralstonia phage RSM3	8929	59.648	Ralstonia	Group II	Habenivirus	Habenivirus	Unclassified	Inoviridae	Tubulavirales	Faserviricetes	Hofneiviricota	Loebvirae	Floreoviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
AB451219	Ralstonia phage RSB1	43079	61.738	Ralstonia	Group I	Higashivirus	Higashivirus	Okabevirinae	Autonotataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Ralstonia solanacearum	High-quality	High-quality	100.000	AAI-based (high-confidence)	Higashivirus	Higashivirus RSB1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
AB472900	Pseudomonas phage KPP10	88322	54.794	Pseudomonas	Group I	Nankokuvirus	Nankokuvirus	Unclassified	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Nankokuvirus	Nankokuvirus KPP10	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic