INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KM612259 | Vibrio phage QH | 39725 | 50.505 | Vibrio | Group I | Enhodamvirus | Enhodamvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae 2095 | High-quality | High-quality | 99.470 | AAI-based (high-confidence) | Enhodamvirus | Enhodamvirus VP2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KM612260 | Vibrio phage CJY | 39542 | 50.556 | Vibrio | Group I | Enhodamvirus | Enhodamvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae 2095 | High-quality | High-quality | 99.020 | AAI-based (high-confidence) | Enhodamvirus | Enhodamvirus VP2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KM612261 | Vibrio phage H1 | 39530 | 50.544 | Vibrio | Group I | Enhodamvirus | Enhodamvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae 2095 | High-quality | High-quality | 98.990 | AAI-based (high-confidence) | Enhodamvirus | Enhodamvirus VP2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KM612262 | Vibrio phage H2 SGB-2014 | 39530 | 50.549 | Vibrio | Group I | Enhodamvirus | Enhodamvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae 2095 | High-quality | High-quality | 98.990 | AAI-based (high-confidence) | Enhodamvirus | Enhodamvirus VP2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KM612263 | Vibrio phage H3 | 39530 | 50.539 | Vibrio | Group I | Enhodamvirus | Enhodamvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae 2095 | High-quality | High-quality | 98.990 | AAI-based (high-confidence) | Enhodamvirus | Enhodamvirus VP2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KM612264 | Vibrio phage J2 | 39530 | 50.582 | Vibrio | Group I | Enhodamvirus | Enhodamvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae 2095 | High-quality | High-quality | 98.990 | AAI-based (high-confidence) | Enhodamvirus | Enhodamvirus VP2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KM612265 | Vibrio phage J3 | 39782 | 50.545 | Vibrio | Group I | Enhodamvirus | Enhodamvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cholerae 2095 | High-quality | High-quality | 99.620 | AAI-based (high-confidence) | Enhodamvirus | Enhodamvirus VP2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KM652553 | Mycobacterium phage CaptainTrips | 57328 | 61.523 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.540 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus captaintrips | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_38;integrase orf_40;immunity orf_42;cro orf_43 |
| KM652554 | Streptomyces phage Jay2Jay | 133531 | 49.497 | Streptomyces | Group I | Samistivirus | Samistivirus | Boydwoodruffvirinae | Stanwilliamsviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces lividans JI1326 | Complete | High-quality | 100.000 | DTR (high-confidence) | Samistivirus | Samistivirus jay2jay | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KM657822 | Escherichia phage vB_EcoM-VpaE1 | 88403 | 38.943 | Escherichia | Group I | Felixounavirus | Felixounavirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli B strains | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Felixounavirus | Felixounavirus VpaE1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |