Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
KM612259Vibrio phage QH3972550.505VibrioGroup I EnhodamvirusEnhodamvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio cholerae 2095High-qualityHigh-quality99.470AAI-based (high-confidence) EnhodamvirusEnhodamvirus VP2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KM612260Vibrio phage CJY3954250.556VibrioGroup I EnhodamvirusEnhodamvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio cholerae 2095High-qualityHigh-quality99.020AAI-based (high-confidence) EnhodamvirusEnhodamvirus VP2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KM612261Vibrio phage H13953050.544VibrioGroup I EnhodamvirusEnhodamvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio cholerae 2095High-qualityHigh-quality98.990AAI-based (high-confidence) EnhodamvirusEnhodamvirus VP2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KM612262Vibrio phage H2 SGB-20143953050.549VibrioGroup I EnhodamvirusEnhodamvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio cholerae 2095High-qualityHigh-quality98.990AAI-based (high-confidence) EnhodamvirusEnhodamvirus VP2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KM612263Vibrio phage H33953050.539VibrioGroup I EnhodamvirusEnhodamvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio cholerae 2095High-qualityHigh-quality98.990AAI-based (high-confidence) EnhodamvirusEnhodamvirus VP2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KM612264Vibrio phage J23953050.582VibrioGroup I EnhodamvirusEnhodamvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio cholerae 2095High-qualityHigh-quality98.990AAI-based (high-confidence) EnhodamvirusEnhodamvirus VP2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KM612265Vibrio phage J33978250.545VibrioGroup I EnhodamvirusEnhodamvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio cholerae 2095High-qualityHigh-quality99.620AAI-based (high-confidence) EnhodamvirusEnhodamvirus VP2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KM652553Mycobacterium phage CaptainTrips5732861.523MycobacteriumGroup I CheoctovirusCheoctovirusGracegardnervirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.540AAI-based (high-confidence) CheoctovirusCheoctovirus captaintripsThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateimmunity orf_38;integrase orf_40;immunity orf_42;cro orf_43
KM652554Streptomyces phage Jay2Jay13353149.497StreptomycesGroup I SamistivirusSamistivirusBoydwoodruffvirinaeStanwilliamsviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptomyces lividans JI1326CompleteHigh-quality100.000DTR (high-confidence) SamistivirusSamistivirus jay2jayCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
KM657822Escherichia phage vB_EcoM-VpaE18840338.943EscherichiaGroup I FelixounavirusFelixounavirusOunavirinaeAndersonviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli B strainsHigh-qualityHigh-quality100.000AAI-based (high-confidence) FelixounavirusFelixounavirus VpaE1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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