INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KM507819 | Escherichia phage 121Q | 348532 | 34.114 | Escherichia | Group I | Asteriusvirus | Asteriusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli MuLB70.1 | High-quality | High-quality | 92.500 | AAI-based (high-confidence) | Asteriusvirus | Asteriusvirus av121Q | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KM514685 | Lactobacillus phage Ldl1 | 74806 | 37.763 | Lactobacillus | Group I | Lidleunavirus | Lidleunavirus | Tybeckvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus delbrueckii subsp. lactis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Lidleunavirus | Lidleunavirus Ldl1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_35;antirepressor orf_67;antirepressor orf_69;antirepressor orf_78;antirepressor orf_79;antirepressor orf_80;antirepressor orf_81 |
| KM576124 | Klebsiella phage phiBO1E | 43865 | 53.852 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae subsp. pneumoniae KKBO-1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Drulisvirus | Drulisvirus BO1E | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KM581061 | Ruegeria phage DSS3-P1 | 59601 | 64.133 | Ruegeria | Group I | Casjensviridae | Unclassified | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ruegeria pomeroyi DSS-3 | High-quality | High-quality | 97.100 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_68 |
| KM588359 | Mycobacterium phage Carcharodon | 43680 | 66.241 | Mycobacterium | Group I | Charlievirus | Charlievirus | Nclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Charlievirus | Charlievirus Pipsqueaks | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36;immunity orf_37 |
| KM589498 | Gokushovirinae Bog1183_53 | 4609 | 36.537 | Unspecified | Group II | Sphagnuvirus | Sphagnuvirus | Unclassified | Betagokushoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| KM589499 | Microviridae Bog1249_12 | 4451 | 42.373 | Unspecified | Group II | Sphegnavirus | Sphegnavirus | Unclassified | Pichoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| KM589500 | Microviridae Bog5275_51 | 4815 | 47.622 | Unspecified | Group II | Sahondevirus | Sahondevirus | Unclassified | Pichoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| KM589501 | Gokushovirinae Bog5712_52 | 4501 | 51.744 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| KM589502 | Gokushovirinae Bog8989_22 | 4656 | 39.798 | Unspecified | Group II | Sahondenvirus | Sahondenvirus | Unclassified | Betagokushoviridae | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown |