INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KJ451625	Bacillus phage Bcp1	152778	39.757	Bacillus	Group I	Caeruleovirus	Caeruleovirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus cereus	High-quality	High-quality	95.820	AAI-based (high-confidence)	Caeruleovirus	Caeruleovirus Bcp1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_47
KJ452291	Staphylococcus phage 3MRA	41931	35.411	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	97.780	AAI-based (high-confidence)	Phietavirus	Phietavirus pv3MRA	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_27;antirepressor orf_55;cro orf_59;integrase orf_63
KJ452292	Staphylococcus phage 23MRA	43098	32.902	Staphylococcus	Group I	Biseptimavirus	Biseptimavirus	Bronfenbrennervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Biseptimavirus	Biseptimavirus bv23MRA	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_4;antirepressor orf_28;cro orf_32;integrase orf_37
KJ473422	Acinetobacter phage vB_AbaM_Acibel004	99730	37.270	Acinetobacter	Group I	Queenastridvirus	Queenastridvirus	Unclassified	Luriaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Queenastridvirus	Queenastridvirus Acibel004	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ473423	Acinetobacter phage vB_AbaP_Acibel007	42654	41.166	Acinetobacter	Group I	Daemvirus	Daemvirus	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Daemvirus	Daemvirus acibel007	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ477077	Pseudomonas phage JD024	37380	64.152	Pseudomonas	Group I	Casadabanvirus	Casadabanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	97.500	AAI-based (high-confidence)	Casadabanvirus	Casadabanvirus JD024	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_1
KJ477684	Tequatrovirus T4	168922	35.291	Unspecified	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus T4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ477685	Tequatrovirus T4	166816	35.319	Unspecified	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	99.620	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus T4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ477686	Tequatrovirus T4	165660	35.263	Unspecified	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	99.530	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus T4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ489010	Lactococcus phage P078	54452	33.516	Lactococcus	Group I	Nevevirus	Nevevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactococcus lactis	High-quality	High-quality	97.960	AAI-based (high-confidence)	Nevevirus	Nevevirus P078	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_12