INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KJ021043	Klebsiella phage Kpn112	35560	48.765	Klebsiella	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae ATCC 10031	Medium-quality	Genome-fragment	73.230	AAI-based (high-confidence)	Jedunavirus	Jedunavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	antirepressor orf_30
KJ024807	Bacillus phage vB_BtS_BMBtp3	51366	35.446	Bacillus	Group I	Waukeshavirus	Waukeshavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus thuringiensis serovar tenebrionis strain YBT-1765	High-quality	High-quality	100.000	AAI-based (high-confidence)	Waukeshavirus	Waukeshavirus BMBtp3	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_20;antirepressor orf_42;integrase orf_67
KJ025956	Mycobacterium phage Saal	57775	61.289	Mycobacterium	Group I	Cheoctovirus	Cheoctovirus	Gracegardnervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus saal	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_42;immunity orf_46;antirepressor orf_48
KJ025957	Serratia phage PS2	167266	41.698	Serratia	Group I	Muldoonvirus	Muldoonvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Serratia marcescens	High-quality	High-quality	99.800	AAI-based (high-confidence)	Muldoonvirus	Muldoonvirus PS2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ028219	Mycobacterium phage 32HC	50781	65.731	Mycobacterium	Group I	Trigintaduovirus	Trigintaduovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	99.950	AAI-based (high-confidence)	Trigintaduovirus	Trigintaduovirus 32HC	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_46
KJ081346	Bacillus phage BCP8-2	159071	39.452	Bacillus	Group I	Caeruleovirus	Caeruleovirus	Bastillevirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus cereus JCM 2152	High-quality	High-quality	99.620	AAI-based (high-confidence)	Caeruleovirus	Caeruleovirus BCP82	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ094020	Listeria phage LP-026	67150	36.258	Listeria	Group I	Homburgvirus	Homburgvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Listeria monocytogenes	Complete	High-quality	100.000	DTR (high-confidence)	Homburgvirus	Homburgvirus LP26	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ094021	Listeria phage LP-114	66676	36.434	Listeria	Group I	Homburgvirus	Homburgvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Listeria monocytogenes	Complete	High-quality	100.000	DTR (high-confidence)	Homburgvirus	Homburgvirus LP114	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ094022	Listeria phage LP-030-3	41156	36.554	Listeria	Group I	Aquingentivirus	Aquingentivirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Listeria monocytogenes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Aquingentivirus	Aquingentivirus LP0303	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_52;cro orf_57;antirepressor orf_66
KJ094023	Listeria phage LP-101	43767	35.451	Listeria	Group I	Slepowronvirus	Slepowronvirus	Trabyvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Listeria monocytogenes	High-quality	High-quality	100.000	AAI-based (high-confidence)	Slepowronvirus	Slepowronvirus LP101	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_29;cro orf_32