INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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Genus (TaxMyPhage)

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OQ448193	Staphylococcus phage 80A	139772	27.993	Staphylococcus	Group I	Sepunavirus	Sepunavirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus epidermidis COB-Sec1	High-quality	High-quality	98.970	AAI-based (high-confidence)	Sepunavirus	Sepunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_196
OQ448194	Staphylococcus phage 80B	139645	27.998	Staphylococcus	Group I	Sepunavirus	Sepunavirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus epidermidis COB-Sec1	High-quality	High-quality	98.970	AAI-based (high-confidence)	Sepunavirus	Sepunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_197
OQ448195	Staphylococcus phage 110	141747	27.896	Staphylococcus	Group I	Sepunavirus	Sepunavirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus epidermidis COB-Sec2	High-quality	High-quality	100.000	AAI-based (high-confidence)	Sepunavirus	Sepunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ451773	Acinetobacter phage vB_AP_P1489	41886	39.285	Acinetobacter	Group I	Friunavirus	Friunavirus	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter pittii	High-quality	High-quality	100.000	AAI-based (high-confidence)	Friunavirus	Friunavirus P1489	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ454915	Vibrio virus VPMCC6	48938	40.741	Vibrio	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Vibrio harveyi	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
OQ455240	Salmonella phage SE-W113	42153	49.614	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella enterica subsp. enterica serovar Enteritidis	High-quality	High-quality	98.290	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus SEW109	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ455241	Salmonella phage ST-W49	156805	44.430	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella enterica subsp. enterica serovar Typhimurium	High-quality	High-quality	99.200	AAI-based (high-confidence)	Kuttervirus	Kuttervirus STW77	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ455242	Salmonella phage ST-W115	59813	56.359	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella enterica subsp. enterica serovar Typhimurium	High-quality	High-quality	92.720	AAI-based (high-confidence)	Chivirus	Chivirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_63
OQ466432	Escherichia phage ADUt	166904	35.673	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia sp.	Complete	High-quality	100.000	DTR (high-confidence)	Tequatrovirus	Tequatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ469755	Salmonella phage vB_SenS_ST1UNAM	47877	46.705	Salmonella	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic