INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OQ338181	Pseudomonas phage HMGUpa2	45446	52.429	Pseudomonas	Group I	Bruynoghevirus	Bruynoghevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa DSM 50071	Complete	High-quality	100.000	DTR (high-confidence)	Bruynoghevirus	Bruynoghevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ338182	Pseudomonas phage HMGUpa1	43833	54.628	Pseudomonas	Group I	Septimatrevirus	Septimatrevirus	Jondennisvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa DSM 50071	High-quality	High-quality	100.000	AAI-based (high-confidence)	Septimatrevirus	Septimatrevirus samson	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ338183	Staphylococcus phage HMGUsa1	43576	33.810	Staphylococcus	Group I	Triavirus	Triavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus SH100	High-quality	High-quality	93.480	AAI-based (high-confidence)	Triavirus	Triavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_24;cro orf_27;cro orf_28;antirepressor orf_30;integrase orf_65
OQ338184	Staphylococcus phage HMGUsa2	142704	30.403	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus Newman	Complete	High-quality	100.000	DTR (high-confidence)	Kayvirus	Kayvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ338185	Serratia phage HMGUsm2	39181	50.872	Serratia	Group I	Teetrevirus	Teetrevirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Serratia marcescens NRZ-49541	Complete	High-quality	100.000	DTR (high-confidence)	Teetrevirus	Teetrevirus HMGUsm2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ341635	Salmonella phage PRF-SP13	113775	40.330	Salmonella	Group I	Epseptimavirus	Epseptimavirus	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Enteritidis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Epseptimavirus	Epseptimavirus PRFSP13	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OQ349392	Escherichia phage KIT06	167059	35.611	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli NBRC 3972:	High-quality	High-quality	99.230	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OQ354711	Pseudomonas phage WX_Y	7205	57.474	Pseudomonas	Group II	Pythonevirus	Pythonevirus	Unclassified	Inoviridae	Tubulavirales	Faserviricetes	Hofneiviricota	Loebvirae	Floreoviria	Pseudomonas aeruginosa	High-quality	High-quality	99.040	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
OQ355699	Staphylococcus phage vB_SepS_BE20	43521	34.974	Staphylococcus	Group I	Rockefellervirus	Rockefellervirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus epidermidis	Complete	High-quality	100.000	DTR (high-confidence)	Rockefellervirus	Rockefellervirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_21;antirepressor orf_28
OQ355700	Staphylococcus phage vB_SepS_BE21	43563	35.007	Staphylococcus	Group I	Rockefellervirus	Rockefellervirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus epidermidis	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	antirepressor orf_47;integrase orf_51