INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
OP889240	Enterococcus phage vB_EfaS_Ef6.1	41871	34.618	Enterococcus	Group I	Efquatrovirus	Efquatrovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis	Complete	High-quality	100.000	DTR (high-confidence)	Efquatrovirus	Efquatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OP889247	Aeromonas phage AVP1	234448	38.149	Aeromonas	Group I	Ferozepurvirus	Ferozepurvirus	Unclassified	Chimalliviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Aeromonas veronii	High-quality	High-quality	98.680	AAI-based (high-confidence)	Ferozepurvirus	Ferozepurvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OP894055	Susfortunavirus gdyzp5	18888	28.801	Unspecified	Group I	Susfortunavirus	Susfortunavirus	Unclassified	Guelinviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Clostridium perfringens	Complete	High-quality	100.000	ITR (high-confidence)	Susfortunavirus	Susfortunavirus gdyzp5	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OP894077	Listeria phage HS5	39936	36.313	Listeria	Group I	Aquingentivirus	Aquingentivirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Listeria monocytogenes	High-quality	High-quality	98.850	AAI-based (high-confidence)	Aquingentivirus	Aquingentivirus HS5	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_31;cro orf_36;antirepressor orf_45
OP902292	Citrobacter phage BSwS KMM3	49164	42.893	Citrobacter	Group I	Tlsvirus	Tlsvirus	Tempevirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Citrobacter sp. TSA-1	High-quality	High-quality	97.400	AAI-based (high-confidence)	Tlsvirus	Tlsvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_19
OP902293	Citrobacter phage BSwM KMM4	86911	39.005	Citrobacter	Group I	Mooglevirus	Mooglevirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Citrobacter sp. TSA-1	High-quality	High-quality	98.660	AAI-based (high-confidence)	Mooglevirus	Mooglevirus KMM4	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OP902294	Staphylococcus phage BSwM-KMM1	137386	31.342	Staphylococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus LKY-Strp01	High-quality	High-quality	97.070	AAI-based (high-confidence)	Kayvirus	Kayvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
OP902295	Citrobacter phage BSwM KMM2	88537	38.955	Citrobacter	Group I	Mooglevirus	Mooglevirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Citrobacter freundii ZY198	Complete	High-quality	100.000	DTR (high-confidence)	Mooglevirus	Mooglevirus KMM2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
OP910130	Mycobacterium phage Perplexer	51264	63.711	Mycobacterium	Group I	Backyardiganvirus	Backyardiganvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Backyardiganvirus	Backyardiganvirus backyardigan	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;immunity orf_63
OP910131	Arthrobacter phage Sloopyjoe	54511	51.692	Arthrobacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter globiformis B-2979	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic