INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OP856590 | Escherichia phage Ec_MI-02 | 165454 | 35.458 | Escherichia | Group I | Tequatrovirus | Tequatrovirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 98.340 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus pss1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP856857 | Staphylococcus phage PBSA08 | 136673 | 30.015 | Staphylococcus | Group I | Silviavirus | Silviavirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus ATCC 29213 | Complete | High-quality | 100.000 | DTR (high-confidence) | Silviavirus | Silviavirus SA11 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_146 |
| OP858991 | Synechococcus phage Sc-Yong805-1 | 41806 | 64.402 | Synechococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Synechococcus elongatus PCC 7942 = FACHB-805 | Medium-quality | Genome-fragment | 55.210 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_27 |
| OP866730 | Cronobacter phage EspYZU15 | 145277 | 46.747 | Cronobacter | Group I | Seunavirus | Seunavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Cronobacter sakazakii | High-quality | High-quality | 98.390 | AAI-based (high-confidence) | Seunavirus | Seunavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OP867012 | Shewanella phage Dolos | 8146 | 38.448 | Shewanella | Group II | Serpentivirus | Serpentivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Shewanella oneidensis | High-quality | High-quality | 99.370 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| OP867018 | Mycobacterium phage Dewey | 53746 | 67.452 | Mycobacterium | Group I | Gilesvirus | Gilesvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.970 | AAI-based (high-confidence) | Gilesvirus | Gilesvirus giles | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_29 |
| OP867019 | Gordonia phage GalacticEye | 73179 | 59.061 | Gordonia | Group I | Woesvirus | Woesvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | Complete | High-quality | 100.000 | DTR (high-confidence) | Woesvirus | Woesvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_3 |
| OP867020 | Gordonia phage Dalilpop | 66745 | 65.540 | Gordonia | Group I | Gruunavirus | Gruunavirus | Emilbogenvirinae | Zierdtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Gruunavirus | Gruunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP867021 | Mycobacterium phage Shweta | 42691 | 66.335 | Mycobacterium | Group I | Charlievirus | Charlievirus | Nclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.780 | AAI-based (high-confidence) | Charlievirus | Charlievirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_33;immunity orf_34 |
| OP867022 | Gordonia phage Kabocha | 91206 | 60.196 | Gordonia | Group I | Bendigovirus | Bendigovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia rubripertincta NRRL B-16540 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Chidieberevirus | Chidieberevirus chidiebere | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |