INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OP413828 | Klebsiella phage pKP-M186-2.1 | 42894 | 50.998 | Klebsiella | Group I | Ulipvirus | Ulipvirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae M186-2 | High-quality | High-quality | 96.180 | AAI-based (high-confidence) | Ulipvirus | Ulipvirus pKPM18621 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP413829 | Klebsiella phage pKP-M186-2.2 | 44728 | 53.830 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae M186-2 | Complete | High-quality | 100.000 | DTR (high-confidence) | Drulisvirus | Drulisvirus pKPM18622 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP413830 | Klebsiella phage pKV-BS375-3.1 | 45617 | 51.851 | Klebsiella | Group I | Gansuvirus | Gansuvirus | Molineuxvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae BS375-3 | Complete | High-quality | 100.000 | DTR (high-confidence) | Gansuvirus | Gansuvirus pKVBS37531 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP413831 | Klebsiella phage pKP-BM327-1.1 | 76442 | 44.209 | Klebsiella | Group I | Efbeekayvirus | Efbeekayvirus | Waldeevirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae BM327-1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Efbeekayvirus | Efbeekayvirus Bm32711 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_16 |
| OP413832 | Klebsiella phage pKP-BS317-1.1 | 48933 | 50.220 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae BS317-1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Webervirus | Webervirus pKPBS31711 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP422637 | Pseudomonas phage BUCT-PX-5 | 42828 | 53.631 | Pseudomonas | Group I | Septimatrevirus | Septimatrevirus | Jondennisvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Septimatrevirus | Septimatrevirus PX5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP423032 | Salmonella phage vB_Hercules_SET | 157338 | 44.925 | Salmonella | Group I | Kuttervirus | Kuttervirus | Cvivirinae | Ackermannviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica serovar Typhimurium | High-quality | High-quality | 99.560 | AAI-based (high-confidence) | Kuttervirus | Kuttervirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP429095 | Nocardia phage NS-I | 43361 | 66.973 | Nocardia | Group I | Miyazakivirus | Miyazakivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Nocardia seriolae | High-quality | High-quality | 98.410 | AAI-based (high-confidence) | Miyazakivirus | Miyazakivirus NSI | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| OP432864 | Staphylococcus phage SapYZU04 | 140584 | 29.715 | Staphylococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Silviavirus | Silviavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| OP433453 | Alteromonas phage phiAFP1 | 5986 | 40.344 | Alteromonas | Group II | Anademivirus | Anademivirus | Unclassified | Inoviridae | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Alteromonas abrolhosensis JKT1 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown |