INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▲	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
KF971864	Escherichia phage phi191	61035	50.189	Escherichia	Group I	Oslovirus	Oslovirus	Sepvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli O111:H2 strain ED 191	High-quality	High-quality	92.440	AAI-based (high-confidence)	Oslovirus	Oslovirus ov191	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	antirepressor orf_3;antirepressor orf_6;cro orf_22;antirepressor orf_27;antirepressor orf_28;antirepressor orf_45;integrase orf_53
KF977490	Rhizobium phage vB_RglS_P106B	56024	47.922	Rhizobium	Group I	Rigallicvirus	Rigallicvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhizobium gallicum SO14B-4(6)	High-quality	High-quality	100.000	AAI-based (high-confidence)	Rigallicvirus	Rigallicvirus P106B	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KF981601	Mycobacterium phage Echild	53159	63.690	Mycobacterium	Group I	Turbidovirus	Turbidovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Turbidovirus	Turbidovirus benvolio	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	parA orf_32;immunity orf_71
KF981730	Escherichia phage KBNP1711	76184	42.370	Escherichia	Group I	Nieuwekanaalvirus	Nieuwekanaalvirus	Gordonclarkvirinae	Mtkvariviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli KBP1711	High-quality	High-quality	99.850	AAI-based (high-confidence)	Nieuwekanaalvirus	Nieuwekanaalvirus KBNP1711	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
KF981875	Pseudomonas phage SPM-1	65729	54.967	Pseudomonas	Group I	Pbunavirus	Pbunavirus	Unclassified	Lindbergviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	99.510	AAI-based (high-confidence)	Pbunavirus	Pbunavirus F8	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KF981876	Mycobacterium phage ADLER F1725	95702	62.717	Mycobacterium	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacteroides abscessus subsp. bolletii F1725	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	parA orf_75
KF986246	Mycobacterium phage MichelleMyBell	42240	66.030	Mycobacterium	Group I	Charlievirus	Charlievirus	Nclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.900	AAI-based (high-confidence)	Charlievirus	Charlievirus michellemybell	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_33;immunity orf_34
KF986247	Mycobacterium phage Oaker	69099	57.546	Mycobacterium	Group I	Konstantinevirus	Konstantinevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.460	AAI-based (high-confidence)	Konstantinevirus	Konstantinevirus konstantine	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ000058	Salmonella phage STP4-a	159914	36.862	Salmonella	Group I	Gelderlandvirus	Gelderlandvirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella Typhimurium ATCC 14028	High-quality	High-quality	95.190	AAI-based (high-confidence)	Gelderlandvirus	Gelderlandvirus stp4a	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
KJ002054	Shewanella phage Spp001	54791	49.417	Shewanella	Group I	Yushanvirus	Yushanvirus	Nefertitivirinae	Chaseviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Shewanella putrefaciens	High-quality	High-quality	100.000	AAI-based (high-confidence)	Yushanvirus	Yushanvirus Spp001	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic