INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AM910650 | Bruynoghevirus LUZ24 | 45625 | 52.248 | Unspecified | Group I | Bruynoghevirus | Bruynoghevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | Bruynoghevirus | Bruynoghevirus LUZ24 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AM910651 | Pseudomonas phage LUZ19 | 43548 | 62.278 | Pseudomonas | Group I | Phikmvvirus | Phikmvvirus | Krylovirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa PAO1 | Complete | High-quality | 100.000 | DTR (high-confidence) | Phikmvvirus | Phikmvvirus LUZ19 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AP000363 | Enterobacteria phage VT2-Sakai | 60942 | 49.913 | Enterobacteria | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7, strain RIMD0509894 | High-quality | High-quality | 92.920 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_1;cro orf_26;antirepressor orf_37;antirepressor orf_50;antirepressor orf_85 |
| AP000400 | Enterobacteria phage VT1-Sakai | 56480 | 51.710 | Enterobacteria | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | Medium-quality | Genome-fragment | 88.440 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | antirepressor orf_37;antirepressor orf_59;integrase orf_82 |
| AP000422 | Enterobacteria phage VT2-Sakai | 65510 | 50.002 | Enterobacteria | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 97.250 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_2;cro orf_27;cro orf_28;antirepressor orf_57;antirepressor orf_95 |
| AP001553 | Staphylococcus phage phiETA | 43081 | 35.431 | Staphylococcus | Group I | Phietavirus | Phietavirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus E-1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Phietavirus | Phietavirus ETA | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_6;cro orf_7;antirepressor orf_11;integrase orf_36 |
| AP004402 | Stx2 converting phage I | 61765 | 49.389 | Unspecified | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 Okayama O-27 | High-quality | High-quality | 94.320 | AAI-based (high-confidence) | Traversvirus | Traversvirus tv933W | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_31;integrase orf_32;cro orf_59;cro orf_60;antirepressor orf_83 |
| AP005153 | Escherichia Stx1 converting phage | 59866 | 49.694 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 Morioka V526 | High-quality | High-quality | 91.320 | AAI-based (high-confidence) | Traversvirus | Traversvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_33;integrase orf_34;cro orf_59;cro orf_60;antirepressor orf_84 |
| AP005154 | Escherichia phage Stx2 II | 62706 | 49.901 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli O157:H7 Morioka V526 | High-quality | High-quality | 95.630 | AAI-based (high-confidence) | Traversvirus | Traversvirus II | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_33;integrase orf_34;cro orf_59;cro orf_60;antirepressor orf_71;antirepressor orf_88 |
| AP008953 | Staphylococcus phage phiETA2 | 43265 | 34.279 | Staphylococcus | Group I | Dubowvirus | Dubowvirus | Azeredovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dubowvirus | Dubowvirus ETA2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;antirepressor orf_8 |