INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_105858 | Enterococcus phage phiSHEF16 | 151935 | 37.138 | Enterococcus | Group I | Schiekvirus | Schiekvirus | Brockvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecium E1071 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_105863 | Escherichia phage UTI-CM001 | 41222 | 50.883 | Escherichia | Group I | Kagunavirus | Kagunavirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 95.850 | AAI-based (high-confidence) | lytic | ||||
| NC_106229 | Stenotrophomonas phage vB_SmeS_BUCT705 | 50665 | 50.678 | Stenotrophomonas | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Stenotrophomonas maltophilia | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Webervirus | Webervirus BUCT705 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| NC_106230 | Burkholderia phage Menos | 38792 | 64.591 | Burkholderia | Group I | Kayeltresvirus | Kayeltresvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia cenocepacia | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_40 | |||
| NC_106231 | Burkholderia phage Milagro | 39088 | 63.938 | Burkholderia | Group I | Kayeltresvirus | Kayeltresvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia cenocepacia | High-quality | High-quality | 91.810 | AAI-based (high-confidence) | temperate | integrase orf_39 | |||
| NC_106232 | Burkholderia phage Momento | 37756 | 64.038 | Burkholderia | Group I | Kayeltresvirus | Kayeltresvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia cenocepacia | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | cro orf_31;integrase orf_41 | |||
| NC_106233 | Burkholderia phage Musica | 38803 | 63.887 | Burkholderia | Group I | Kayeltresvirus | Kayeltresvirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Burkholderia cenocepacia | High-quality | High-quality | 92.260 | AAI-based (high-confidence) | temperate | integrase orf_40 | |||
| NC_106494 | Klebsiella phage BUCT556A | 49249 | 50.159 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | High-quality | High-quality | 99.410 | AAI-based (high-confidence) | Webervirus | Webervirus BUCT556A | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| NC_106513 | Escherichia phage vB_EcoS_ESCO30 | 112115 | 38.940 | Escherichia | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli DH5a | High-quality | High-quality | 99.170 | AAI-based (high-confidence) | lytic | ||||
| NC_106514 | Escherichia phage vB_EcoS_ESCO40 | 108755 | 39.186 | Escherichia | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli DH5a | High-quality | High-quality | 96.230 | AAI-based (high-confidence) | lytic |