INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AJ560763 | Haemophilus phage Aaphi23 | 43033 | 42.456 | Haemophilus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Actinobacillus actinomycetemcomitans | High-quality | High-quality | 99.060 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1;antirepressor orf_18 |
| AJ564013 | Yersinia phage PY54 | 46339 | 44.574 | Yersinia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia enterocolitica | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | parA orf_26;antirepressor orf_47 |
| AJ567472 | Captovirus AFV1 | 20869 | 36.940 | Unspecified | Group I | Captovirus | Captovirus | Unclassified | Ungulaviridae | Ligamenvirales | Tokiviricetes | Taleaviricota | Zilligvirae | Adnaviria | Acidianus hospitalis | Low-quality | Genome-fragment | 25.140 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AJ609634 | Streptococcus phage EJ-1 | 42935 | 39.641 | Streptococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus pneumoniae 101 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_1;cro orf_4;cro orf_10;cro orf_15 |
| AJ630128 | Synechococcus phage S-PM2 | 196280 | 37.820 | Synechococcus | Group I | Nodensvirus | Nodensvirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. SynWH7803 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nodensvirus | Nodensvirus spm2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AJ635161 | Pyrobaculum spherical virus | 28337 | 48.400 | Pyrobaculum | Unclassified | Alphaglobulovirus | Alphaglobulovirus | Unclassified | Globuloviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unspecified | Not-determined | Genome-fragment | New_genus | New_species | No hits were found with the default settings | lytic | |||
| AJ697969 | Pseudomonas phage EL | 211215 | 49.327 | Pseudomonas | Group I | Elvirus | Elvirus | Unclassified | Chimalliviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Elvirus | Elvirus EL | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| AJ748296 | Sulfolobus islandicus rudivirus 1 variant XX | 33641 | 25.282 | Sulfolobus | Group I | Icerudivirus | Icerudivirus | Unclassified | Rudiviridae | Ligamenvirales | Tokiviricetes | Taleaviricota | Zilligvirae | Adnaviria | Sulfolobus islandicus LAL14/1 | Complete | High-quality | 100.000 | ITR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AJ783769 | Sulfolobus virus STSV1 | 75294 | 35.215 | Sulfolobus | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Bicaudaviridae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Sulfolobus tengchongensis | High-quality | High-quality | 99.540 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| AJ842011 | Flavobacterium phage 11b | 36012 | 30.593 | Flavobacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Flavobacterium sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |