INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KC139516 | Salmonella phage FSL SP-016 | 46698 | 50.158 | Salmonella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | High-quality | High-quality | 93.380 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | cro orf_2;integrase orf_10 |
| KC139517 | Salmonella phage FSL SP-058 | 72394 | 39.586 | Salmonella | Group I | Ithacavirus | Ithacavirus | Humphriesvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | Complete | High-quality | 100.000 | DTR (high-confidence) | Ithacavirus | Ithacavirus SP058 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC139518 | Salmonella phage FSL SP-031 | 42215 | 51.067 | Salmonella | Group I | Cornellvirus | Cornellvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | High-quality | High-quality | 99.270 | AAI-based (high-confidence) | Cornellvirus | Cornellvirus SP31 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC139519 | Salmonella phage FSL SP-030 | 59746 | 56.556 | Salmonella | Group I | Chivirus | Chivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | High-quality | High-quality | 92.160 | AAI-based (high-confidence) | Chivirus | Chivirus FSLSP030 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_61 |
| KC139520 | Salmonella phage FSL SP-076 | 72098 | 39.535 | Salmonella | Group I | Ithacavirus | Ithacavirus | Humphriesvirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | Complete | High-quality | 100.000 | DTR (high-confidence) | Ithacavirus | Ithacavirus SP076 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| KC139521 | Salmonella phage FSLSP004 | 29742 | 52.838 | Salmonella | Group I | Peduovirus | Peduovirus | Unclassified | Peduoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | High-quality | High-quality | 93.680 | AAI-based (high-confidence) | Peduovirus | Peduovirus FSLSP004 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_28 |
| KC171646 | Lactobacillus phage J-1 | 40931 | 44.768 | Lactobacillus | Group I | Junavirus | Junavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus paracasei 27092 | High-quality | High-quality | 97.810 | AAI-based (high-confidence) | Junavirus | Junavirus J1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_22;cro orf_49 |
| KC171647 | Lactobacillus phage PL-1 | 38880 | 44.882 | Lactobacillus | Group I | Junavirus | Junavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus paracasei 27139 | High-quality | High-quality | 92.650 | AAI-based (high-confidence) | Junavirus | Junavirus PL1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_23;cro orf_47 |
| KC172839 | Mycobacterium phage BTCU-1 | 45942 | 64.246 | Mycobacterium | Group I | Veracruzvirus | Veracruzvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis | High-quality | High-quality | 91.520 | AAI-based (high-confidence) | Veracruzvirus | Veracruzvirus BTCU1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_32;integrase orf_33 |
| KC182542 | Lactococcus phage 340 | 32337 | 34.487 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Skunavirus | Skunavirus sv340 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |