INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_055033 | Arthrobacter phage Salgado | 59807 | 64.635 | Arthrobacter | Group I | Laroyevirus | Laroyevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_055034 | Arthrobacter phage Wheelbite | 59879 | 64.766 | Arthrobacter | Group I | Laroyevirus | Laroyevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Arthrobacter sp. ATCC 21022 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_055035 | Fusobacterium phage Fnu1 | 130914 | 24.950 | Fusobacterium | Group I | Latrobevirus | Latrobevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Fusobacterium nucleatum ATCC 10953 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_60;antirepressor orf_130;antirepressor orf_177 | |||
| NC_055036 | Staphylococcus phage IME1348_01 | 42371 | 34.686 | Staphylococcus | Group I | Rockefellervirus | Rockefellervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis IME1348 | High-quality | High-quality | 98.540 | AAI-based (high-confidence) | temperate | integrase orf_1;antirepressor orf_7 | |||
| NC_055037 | Leuconostoc phage phiMH1 | 38709 | 38.678 | Leuconostoc | Group I | Seongbukvirus | Seongbukvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leuconostoc pseudomesenteroides KD04 | Medium-quality | Genome-fragment | 65.710 | HMM-based (lower-bound) | temperate | antirepressor orf_5;integrase orf_60 | |||
| NC_055038 | Staphylococcus phage SH-St 15644 | 45111 | 33.349 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus 644 | High-quality | High-quality | 97.100 | AAI-based (high-confidence) | temperate | integrase orf_25;cro orf_31;integrase orf_57 | |||
| NC_055039 | Staphylococcus phage vB_SauS_fPfSau02 | 45108 | 33.708 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 96.830 | AAI-based (high-confidence) | temperate | integrase orf_25;antirepressor orf_31;integrase orf_62 | |||
| NC_055040 | Staphylococcus phage vB_SauS_JS02 | 46435 | 33.143 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_2;integrase orf_3;cro orf_9;integrase orf_31 | |||
| NC_055041 | Staphylococcus phage LH1 | 46048 | 33.191 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 99.210 | AAI-based (high-confidence) | temperate | integrase orf_27;cro orf_31;antirepressor orf_33;integrase orf_54 | |||
| NC_055042 | Staphylococcus phage P240 | 45985 | 33.111 | Staphylococcus | Group I | Triavirus | Triavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 99.090 | AAI-based (high-confidence) | temperate | integrase orf_31;integrase orf_60 |