INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_048676 | Pseudomonas phage SL1 | 65847 | 55.585 | Pseudomonas | Group I | Pbunavirus | Pbunavirus | Unclassified | Lindbergviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_048677 | Lactobacillus phage LpeD | 145162 | 34.112 | Lactobacillus | Group I | Elpedvirus | Elpedvirus | Unclassified | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus pentosus KLDS1.0413; Lactobacillus plantarum KLDS1.0344 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_048678 | Leptospira phage LE3 | 48288 | 37.312 | Leptospira | Group I | Nylescharonvirus | Nylescharonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leptospira biflexa Patoc 1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_048679 | Leptospira phage LE4 | 47866 | 37.285 | Leptospira | Group I | Nylescharonvirus | Nylescharonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leptospira biflexa Patoc 1 | High-quality | High-quality | 99.130 | AAI-based (high-confidence) | lytic | ||||
| NC_048680 | Lactobacillus phage LJ | 44260 | 44.781 | Lactobacillus | Group I | Junavirus | Junavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactobacillus casei W56 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_54;integrase orf_60;antirepressor orf_64 | |||
| NC_048681 | Staphylococcus phage phiSa2wa_st22 | 38576 | 33.241 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus subsp. aureus 16386 genotype ST22-MRSA-IVc (2B) | High-quality | High-quality | 91.380 | AAI-based (high-confidence) | temperate | integrase orf_1;cro orf_5;cro orf_6;antirepressor orf_7 | |||
| NC_048682 | Raoultella phage Ro1 | 145759 | 44.548 | Raoultella | Group I | Mydovirus | Mydovirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Raoultella ornithinolytica | High-quality | High-quality | 99.630 | AAI-based (high-confidence) | lytic | ||||
| NC_048683 | Salmonella phage KFS-SE1 | 59715 | 56.711 | Salmonella | Group I | Chivirus | Chivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis | High-quality | High-quality | 92.540 | AAI-based (high-confidence) | temperate | integrase orf_57 | |||
| NC_048684 | Streptomyces phage WRightOn | 45221 | 60.313 | Streptomyces | Group I | Manuelvirus | Manuelvirus | Beephvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces viridochromogenes DSM40736 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_048685 | Streptomyces phage Manuel | 45177 | 60.095 | Streptomyces | Group I | Manuelvirus | Manuelvirus | Beephvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptomyces lividans JI 1326 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic |