INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_042023 | Enterococcus phage phiSHEF5 | 41598 | 34.747 | Enterococcus | Group I | Efquatrovirus | Efquatrovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_042024 | Lactococcus virus P2 | 27595 | 34.727 | Lactococcus | Group I | Skunavirus | Skunavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Lactococcus lactis subsp. cremoris MG1363 | High-quality | High-quality | 91.000 | AAI-based (high-confidence) | lytic | ||||
| NC_042025 | Salmonella phage SE1 (in:Nonagvirus) | 60030 | 43.385 | Salmonella | Group I | Nonagvirus | Nonagvirus | Queuovirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_042027 | Mycobacterium phage Pumpkin | 74491 | 62.958 | Mycobacterium | Group I | Kostyavirus | Kostyavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.840 | AAI-based (high-confidence) | temperate | integrase orf_53;immunity orf_56 | |||
| NC_042028 | Acinetobacter phage AB1 | 45159 | 37.689 | Acinetobacter | Group I | Wenzhouvirus | Wenzhouvirus | Unclassified | Hirszfeldviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_042029 | Edwardsiella phage eiAU | 43015 | 55.432 | Edwardsiella | Group I | Eiauvirus | Eiauvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Edwardsiella ictaluri | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_042030 | Mycobacterium phage Yoshi | 58714 | 61.023 | Mycobacterium | Group I | Avanivirus | Avanivirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_53;antirepressor orf_60 | |||
| NC_042031 | Mycobacterium phage Anaya | 60835 | 66.394 | Mycobacterium | Group I | Anayavirus | Anayavirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.390 | AAI-based (high-confidence) | temperate | integrase orf_42;immunity orf_44 | |||
| NC_042032 | Mycobacterium phage Marvin | 65100 | 63.424 | Mycobacterium | Group I | Marvinvirus | Marvinvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.350 | AAI-based (high-confidence) | lytic | ||||
| NC_042033 | Mycobacterium phage Send513 | 71547 | 55.998 | Mycobacterium | Group I | Papyrusvirus | Papyrusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.710 | AAI-based (high-confidence) | lytic |