INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_031239 | Gordonia phage Vivi2 | 59337 | 67.133 | Gordonia | Group I | Vividuovirus | Vividuovirus | Schenleyvirinae | Stackebrandtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_031241 | Staphylococcus phage CNPx | 43293 | 34.661 | Staphylococcus | Group I | Rockefellervirus | Rockefellervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus epidermidis LM1680 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_32;cro orf_36;antirepressor orf_40 | |||
| NC_031242 | Cyanophage S-RIM50 | 174307 | 40.281 | Synechococcus | Group I | Neptunevirus | Neptunevirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Synechococcus sp. | High-quality | High-quality | 99.940 | AAI-based (high-confidence) | lytic | ||||
| NC_031243 | Mycobacterium phage Xeno | 42395 | 66.803 | Mycobacterium | Group I | Charlievirus | Charlievirus | Nclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.050 | AAI-based (high-confidence) | temperate | integrase orf_32;immunity orf_33 | |||
| NC_031245 | Bacillus phage SP-15 | 221908 | 38.608 | Bacillus | Group I | Thornevirus | Thornevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus subtilis W-23-S(r); Bacillus licheniformis ATCC 9945a | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_031246 | Klebsiella phage KpV71 | 43267 | 53.979 | Klebsiella | Group I | Drulisvirus | Drulisvirus | Slopekvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae B-7850 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_031247 | Gordonia phage BetterKatz | 50636 | 67.114 | Gordonia | Group I | Betterkatzvirus | Betterkatzvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.880 | AAI-based (high-confidence) | temperate | integrase orf_36;immunity orf_37 | |||
| NC_031249 | Gordonia phage UmaThurman | 50127 | 67.026 | Gordonia | Group I | Jujuvirus | Jujuvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 98.800 | AAI-based (high-confidence) | temperate | integrase orf_35 | |||
| NC_031250 | Salmonella phage BP63 | 52437 | 46.021 | Salmonella | Group I | Rosemountvirus | Rosemountvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica Infantis | High-quality | High-quality | 99.110 | AAI-based (high-confidence) | lytic | ||||
| NC_031251 | Gordonia phage SoilAssassin | 47880 | 66.819 | Gordonia | Group I | Attisvirus | Attisvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_34;immunity orf_39;antirepressor orf_43 |