INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_031086 | Acinetobacter phage phiAB6 | 40570 | 39.468 | Acinetobacter | Group I | Friunavirus | Friunavirus | Beijerinckvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii 54149 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_031087 | Klebsiella phage vB_KpnM_KpV477 | 168272 | 39.321 | Klebsiella | Group I | Jiaodavirus | Jiaodavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae KPB463 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_031090 | Shigella phage SHSML-52-1 | 169621 | 37.576 | Shigella | Group I | Mosigvirus | Mosigvirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Shigella sonnei | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | lytic | ||||
| NC_031091 | Pseudomonas phage MD8 | 43277 | 61.134 | Pseudomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_33 | |||
| NC_031092 | Citrobacter phage SH2 | 39158 | 50.723 | Citrobacter | Group I | Teetrevirus | Teetrevirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter freundii CF5 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_031094 | Streptococcus phage 9872 | 33105 | 36.840 | Streptococcus | Group I | Piorkowskivirus | Piorkowskivirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus ST64987 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | antirepressor orf_27 | |||
| NC_031095 | Klebsiella phage PKO111 | 168758 | 39.394 | Klebsiella | Group I | Jiaodavirus | Jiaodavirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella oxytoca ATCC 43863 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_031096 | Pectobacterium phage PP90 | 44570 | 48.889 | Pectobacterium | Group I | Phimunavirus | Phimunavirus | Corkvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium atrosepticum PB72 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_031097 | Gordonia phage Zirinka | 52077 | 66.667 | Gordonia | Group I | Nymphadoravirus | Nymphadoravirus | Nymbaxtervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 99.000 | AAI-based (high-confidence) | temperate | integrase orf_36;immunity orf_41;antirepressor orf_45 | |||
| NC_031098 | Acinetobacter phage vB_AbaS_TRS1 | 40749 | 40.256 | Acinetobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii A118 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_30 |