INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_028953 | Mycobacterium phage MiaZeal | 110764 | 61.153 | Mycobacterium | Group I | Omegavirus | Omegavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 99.890 | AAI-based (high-confidence) | temperate | integrase orf_86;immunity orf_190 | |||
| NC_028954 | Rhodobacter phage RcRhea | 36065 | 65.446 | Rhodobacter | Group I | Cronusvirus | Cronusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhodobacter capsulatus YW1 | High-quality | High-quality | 99.960 | AAI-based (high-confidence) | lytic | ||||
| NC_028955 | Prochlorococcus phage P-TIM68 | 197361 | 34.321 | Prochlorococcus | Group I | Haifavirus | Haifavirus | Unclassified | Kyanoviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Prochlorococcus sp. MIT9515 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | lytic | ||||
| NC_028956 | Mannheimia phage vB_MhS_1152AP2 | 52139 | 41.094 | Mannheimia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mannheimia haemolytica 1152A serotype A6 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_30;antirepressor orf_34;cro orf_56;cro orf_57 | |||
| NC_028957 | Escherichia phage vB_EcoM_VR26 | 171541 | 40.222 | Escherichia | Group I | Gaprivervirus | Gaprivervirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_028958 | Clostridium phage phiCD146 | 41507 | 30.689 | Clostridium | Group I | Leicestervirus | Leicestervirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile | High-quality | High-quality | 99.890 | AAI-based (high-confidence) | temperate | parA orf_30;cro orf_34;integrase orf_49 | |||
| NC_028959 | Clostridium phage phiMMP03 | 52261 | 28.870 | Clostridium | Group I | Yongloolinvirus | Yongloolinvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile | High-quality | High-quality | 96.280 | AAI-based (high-confidence) | temperate | cro orf_5;integrase orf_46;antirepressor orf_52 | |||
| NC_028960 | Mycobacterium phage Theia | 51543 | 60.802 | Mycobacterium | Group I | Benedictvirus | Benedictvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_26;immunity orf_64 | |||
| NC_028961 | Mycobacterium phage PopTart | 55094 | 61.644 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 95.650 | AAI-based (high-confidence) | temperate | integrase orf_37;immunity orf_39;antirepressor orf_40 | |||
| NC_028962 | Staphylococcus phage vB_SepM_ phiIPLA-C1C | 140961 | 27.960 | Staphylococcus | Group I | Sepunavirus | Sepunavirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus sp. | High-quality | High-quality | 99.850 | AAI-based (high-confidence) | lytic |