INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▲ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_028754 | Salmonella phage Shivani | 120098 | 38.839 | Salmonella | Group I | Tequintavirus | Tequintavirus | Markadamsvirinae | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Typhimurium | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| NC_028755 | Citrobacter phage Margaery | 178182 | 44.868 | Citrobacter | Group I | Pseudotevenvirus | Pseudotevenvirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Citrobacter sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_028757 | Mycobacterium phage Tiffany | 50768 | 63.991 | Mycobacterium | Group I | Microwolfvirus | Microwolfvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterum smegmatis mc2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_32;immunity orf_69 | |||
| NC_028758 | Paenibacillus phage HB10c2 | 35644 | 41.844 | Paenibacillus | Group I | Fernvirus | Fernvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus larvae | Medium-quality | Genome-fragment | 89.170 | AAI-based (high-confidence) | temperate | antirepressor orf_26;integrase orf_27;antirepressor orf_30;antirepressor orf_32;antirepressor orf_35 | |||
| NC_028759 | Mycobacterium phage Mufasa | 58065 | 68.232 | Mycobacterium | Group I | Timquatrovirus | Timquatrovirus | Weiservirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | temperate | integrase orf_44;immunity orf_46;cro orf_47 | |||
| NC_028760 | Klebsiella phage KLPN1 | 49037 | 50.525 | Klebsiella | Group I | Webervirus | Webervirus | Unclassified | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae subsp. pneumoniae L4-FAA5 (capsular type K2) | High-quality | High-quality | 98.980 | AAI-based (high-confidence) | lytic | ||||
| NC_028762 | Proteus phage vB_PmiM_Pm5461 | 161989 | 31.082 | Proteus | Group I | Bragavirus | Bragavirus | Unclassified | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Proteus mirabilis 417 | High-quality | High-quality | 98.540 | AAI-based (high-confidence) | lytic | ||||
| NC_028763 | Polaribacter phage P12002S | 49847 | 28.933 | Polaribacter | Group I | Incheonvirus | Incheonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| NC_028764 | Clostridium phage phiCD505 | 49316 | 29.384 | Clostridium | Group I | Colneyvirus | Colneyvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Clostridium difficile | High-quality | High-quality | 99.150 | AAI-based (high-confidence) | temperate | integrase orf_41 | |||
| NC_028765 | Staphylococcus phage phiIPLA-RODI | 142348 | 30.425 | Staphylococcus | Group I | Kayvirus | Kayvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic |